Homologs in group_188

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08195 FBDBKF_08195 27.5 Morganella morganii S1 rep DNA helicase Rep
EHELCC_13330 EHELCC_13330 27.5 Morganella morganii S2 rep DNA helicase Rep
NLDBIP_13670 NLDBIP_13670 27.5 Morganella morganii S4 rep DNA helicase Rep
LHKJJB_12885 LHKJJB_12885 27.5 Morganella morganii S3 rep DNA helicase Rep
HKOGLL_12145 HKOGLL_12145 27.5 Morganella morganii S5 rep DNA helicase Rep
F4V73_RS18740 F4V73_RS18740 26.7 Morganella psychrotolerans rep DNA helicase Rep
PMI_RS12245 PMI_RS12245 25.4 Proteus mirabilis HI4320 - UvrD-helicase domain-containing protein
PMI_RS16455 PMI_RS16455 27.5 Proteus mirabilis HI4320 rep DNA helicase Rep

Distribution of the homologs in the orthogroup group_188

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_188

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O51889 1.38e-17 90 21 24 634 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P44804 2.7e-17 89 22 24 640 3 rep ATP-dependent DNA helicase Rep Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45612 2.33e-14 80 22 22 615 3 uvrD Probable DNA helicase II homolog Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)
Q6GFF2 2.96e-13 76 23 28 629 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain MRSA252)
P64319 1.31e-12 74 23 28 629 1 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain N315)
P64318 1.31e-12 74 23 28 629 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NVT1 1.35e-12 74 23 28 629 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain MW2)
Q6G828 1.35e-12 74 23 28 629 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain MSSA476)
Q5HEL7 1.35e-12 74 23 28 629 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain COL)
Q53727 1.35e-12 74 23 28 629 1 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q1RIP8 1.54e-09 64 26 11 350 3 uvrD Probable DNA helicase II homolog Rickettsia bellii (strain RML369-C)
P75438 1.79e-09 64 24 9 294 3 MPN_340 Probable DNA helicase MPN_340 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P57654 6.92e-09 62 21 12 355 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P57654 0.000156 48 30 1 78 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89A21 1.14e-08 62 25 10 349 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9S3Q0 1.85e-08 61 25 9 277 3 pcrA ATP-dependent DNA helicase PcrA Leuconostoc citreum
P47486 2.58e-08 60 22 10 359 3 uvrD Probable DNA helicase II homolog Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P03018 5.62e-08 59 24 11 298 1 uvrD DNA helicase II Escherichia coli (strain K12)
Q8K9A9 9.21e-08 59 32 2 93 3 recB RecBCD enzyme subunit RecB Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9PLT8 1.35e-07 58 33 3 109 3 recB RecBCD enzyme subunit RecB Chlamydia muridarum (strain MoPn / Nigg)
Q92HZ6 5.58e-07 56 30 5 161 3 uvrD Probable DNA helicase II homolog Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4ULN5 9.77e-07 55 31 5 161 3 uvrD Probable DNA helicase II homolog Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
O84645 1.05e-06 55 33 3 109 3 recB RecBCD enzyme subunit RecB Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9ZD95 1.11e-06 55 23 16 381 3 uvrD Probable DNA helicase II homolog Rickettsia prowazekii (strain Madrid E)
Q05311 1.14e-06 55 23 13 337 3 uvrD DNA helicase II Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q02322 2.9e-06 54 31 3 126 1 uvrD DNA helicase II Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q68WT1 4.23e-06 53 29 5 161 3 uvrD DNA helicase II Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P45157 1.23e-05 52 31 4 130 3 recB RecBCD enzyme subunit RecB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AB3 1.38e-05 52 30 2 90 3 recB RecBCD enzyme subunit RecB Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
D1KF50 1.39e-05 52 30 3 128 1 SRS2 ATP-dependent DNA helicase SRS2-like protein At4g25120 Arabidopsis thaliana
D1KF50 0.000202 48 33 1 74 1 SRS2 ATP-dependent DNA helicase SRS2-like protein At4g25120 Arabidopsis thaliana
Q9Z7G7 5.8e-05 50 32 2 89 3 recB RecBCD enzyme subunit RecB Chlamydia pneumoniae
P09980 5.99e-05 50 27 5 158 1 rep ATP-dependent DNA helicase Rep Escherichia coli (strain K12)
A0QS29 6.25e-05 50 34 4 110 3 recB RecBCD enzyme subunit RecB Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WMQ3 0.000117 49 37 3 100 1 recB RecBCD enzyme subunit RecB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMQ2 0.000117 49 37 3 100 3 recB RecBCD enzyme subunit RecB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9L6S1 0.000142 48 27 5 158 3 rep ATP-dependent DNA helicase Rep Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P57529 0.000215 48 30 4 105 3 recB RecBCD enzyme subunit RecB Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
B2GEY4 0.000383 47 31 3 95 3 addA ATP-dependent helicase/nuclease subunit A Limosilactobacillus fermentum (strain NBRC 3956 / LMG 18251)
Q8CRT9 0.000432 47 40 3 77 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HN29 0.00044 47 40 3 77 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P08394 0.000456 47 34 3 84 1 recB RecBCD enzyme subunit RecB Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12040
Feature type CDS
Gene -
Product ATP-dependent helicase
Location 2662014 - 2663906 (strand: -1)
Length 1893 (nucleotides) / 630 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_188
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF00580 UvrD/REP helicase N-terminal domain
PF13361 UvrD-like helicase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0210 Replication, recombination and repair (L) L Superfamily I DNA or RNA helicase

Protein Sequence

MKFIRPDHWQPKGIDDLEPNAWQALRQRESTSIIAGPGAGKTEFLAQKAAYLLETGLCPSNKKILAISFKTDAAKNLADRVKERCSEEVSNRFISMTFDAFTKNLIDRFRMALPEHHRPSKRYEISFPSFHQEKQLISSFRNNFGNAVGIYSFTQRLQNMNQFIGSVRIGDPKLSWLEEEFLTFWLSQQINYPDGVSRVSFPALNRLAEYIVRTNDHVRRSIRASYPIVFVDEFQDTTFAQYDFLSSVFKSSEAEVTAVGDYKQRIMGWAGAKGDVFHQFEADFSAERHSLLLNHRSSPELVRIQHVIAQAIDHEVREVQTSNINLISGDAAWICCSYNINQEAAHLAEWIANDLLGRSLNPRNYSILVRQKPEDYEQQLSYYLAQHGLSLRNESVKIGQTTLQDLLAEELTILFSTLLRLGLVRRNAQAWNQLSSDIRILRNTNQEDEKALRQVERELTKFISTLRMLMQQPLTRENGRDVFERTIKFINSDDLRSSFSRYATGNLLEINLAALEEFFINCVDTQNSWAGLLDEFEGTNHIPLMTIHKSKGLEFDTTIFMGIDDNAWWSYKQGDKEGLSTFFVALSRAKQRAIFSYCQQRGQRTNVADFYELLTAAGVQEYAIQPSVVA

Flanking regions ( +/- flanking 50bp)

CGGGCTTTAGTTCTAGCTATTCACACAACCCTTCAAAACCAGGAGGCAAGGTGAAGTTTATTCGACCTGACCACTGGCAGCCGAAGGGGATCGACGATCTTGAGCCAAATGCTTGGCAAGCACTAAGGCAACGAGAGTCCACAAGTATTATCGCTGGCCCTGGAGCCGGAAAGACAGAGTTTTTAGCGCAAAAGGCTGCATATCTGCTTGAGACTGGCCTATGTCCATCAAACAAAAAAATTCTGGCGATTTCATTCAAGACTGATGCCGCAAAAAATCTCGCAGATAGAGTGAAAGAGCGTTGTTCAGAAGAAGTCAGCAATCGATTTATTTCGATGACTTTTGATGCATTCACTAAGAATTTAATAGATCGATTTCGCATGGCTTTGCCCGAGCATCATCGCCCATCAAAGCGATATGAAATCTCTTTTCCATCTTTTCACCAAGAGAAGCAGCTTATTAGTAGTTTCAGAAATAATTTTGGGAACGCAGTAGGTATCTATAGCTTTACGCAAAGACTCCAAAACATGAATCAGTTTATCGGAAGTGTGCGTATAGGAGATCCCAAGTTGTCATGGTTGGAGGAGGAATTTTTAACTTTTTGGTTGAGTCAGCAAATAAACTACCCCGACGGTGTTTCCAGAGTGTCATTTCCGGCGCTAAATCGACTTGCTGAATATATCGTTCGCACTAACGATCATGTTCGTAGATCTATTAGAGCATCATATCCTATTGTTTTTGTGGATGAGTTCCAAGATACCACGTTTGCTCAATATGATTTTCTATCTTCTGTTTTTAAATCAAGTGAGGCTGAGGTAACAGCAGTAGGAGATTACAAGCAAAGAATAATGGGTTGGGCCGGTGCTAAAGGTGATGTGTTTCATCAATTTGAGGCTGACTTTTCAGCAGAACGACATTCATTGCTCCTTAATCACCGCTCTTCACCTGAATTGGTCAGGATACAACATGTTATTGCACAAGCTATTGACCATGAAGTGAGAGAGGTTCAGACAAGTAATATCAATTTAATTTCTGGTGATGCCGCTTGGATTTGTTGTAGTTACAATATAAATCAGGAGGCTGCTCATTTGGCTGAGTGGATAGCAAATGACTTGCTAGGTAGGTCACTGAATCCAAGAAACTACTCTATTCTGGTGCGTCAAAAACCAGAAGATTATGAACAACAGCTATCTTATTATCTCGCTCAACATGGACTGAGCTTACGAAATGAGAGTGTGAAAATAGGTCAAACTACATTACAAGATTTGCTTGCTGAAGAACTGACCATTTTGTTCTCTACTCTGCTTAGGCTGGGACTGGTCCGTCGAAATGCACAAGCGTGGAATCAACTATCATCAGATATTCGAATTCTTCGTAATACGAACCAGGAAGACGAAAAGGCACTACGACAGGTTGAACGCGAGCTAACAAAGTTCATTTCTACACTACGGATGTTAATGCAACAGCCTCTGACACGGGAAAATGGTCGCGATGTATTTGAGCGAACTATAAAATTTATTAACTCAGACGATCTTCGCAGCTCCTTTTCTCGTTACGCTACAGGAAATTTACTTGAAATAAACTTGGCAGCACTCGAAGAATTTTTTATAAACTGTGTTGATACTCAGAACTCTTGGGCAGGTTTGCTAGATGAGTTTGAAGGCACGAACCATATTCCTCTTATGACTATTCACAAAAGCAAGGGGCTTGAATTCGATACAACCATTTTCATGGGGATAGACGACAACGCTTGGTGGTCTTATAAGCAAGGTGATAAGGAAGGACTATCGACATTTTTTGTAGCACTGTCTCGCGCTAAACAAAGGGCTATTTTTTCCTATTGTCAGCAAAGAGGGCAACGAACCAACGTCGCAGATTTTTATGAGTTGTTGACGGCCGCTGGTGTTCAGGAGTATGCGATCCAACCAAGTGTAGTGGCATAATCTATTTGGTCGCCCCATTTGAGGTTTTGTAATACCTTTTCTAATTCTTT