COG0210


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0210, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Superfamily I DNA or RNA helicase
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0210 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1262 FBDBKF_07360 157341 159395 1 helD DNA helicase IV Morganella morganii S1
1 group_188 FBDBKF_08195 14395 16425 1 rep DNA helicase Rep Morganella morganii S1
2 group_1350 FBDBKF_08365 47532 49694 1 uvrD DNA helicase II Morganella morganii S1
3 group_1262 EHELCC_03610 26791 28845 -1 helD DNA helicase IV Morganella morganii S2
4 group_1350 EHELCC_13160 114031 116193 -1 uvrD DNA helicase II Morganella morganii S2
5 group_188 EHELCC_13330 147300 149330 -1 rep DNA helicase Rep Morganella morganii S2
6 group_1262 NLDBIP_03610 26587 28641 -1 helD DNA helicase IV Morganella morganii S4
7 group_1350 NLDBIP_13500 114031 116193 -1 uvrD DNA helicase II Morganella morganii S4
8 group_188 NLDBIP_13670 147300 149330 -1 rep DNA helicase Rep Morganella morganii S4
9 group_1262 LHKJJB_09440 26701 28755 -1 helD DNA helicase IV Morganella morganii S3
10 group_188 LHKJJB_12885 13113 15143 1 rep DNA helicase Rep Morganella morganii S3
11 group_1350 LHKJJB_13055 46250 48412 1 uvrD DNA helicase II Morganella morganii S3
12 group_1262 HKOGLL_09535 162297 164351 1 helD DNA helicase IV Morganella morganii S5
13 group_1350 HKOGLL_11975 114031 116193 -1 uvrD DNA helicase II Morganella morganii S5
14 group_188 HKOGLL_12145 147300 149330 -1 rep DNA helicase Rep Morganella morganii S5
15 group_1262 F4V73_RS01545 345816 347870 1 helD DNA helicase IV Morganella psychrotolerans
16 group_1350 F4V73_RS09565 12237 14408 1 uvrD DNA helicase II Morganella psychrotolerans
17 group_188 F4V73_RS18740 15282 17303 1 rep DNA helicase Rep Morganella psychrotolerans
18 group_1262 PMI_RS03875 878588 880639 1 helD DNA helicase IV Proteus mirabilis HI4320
19 group_188 PMI_RS12040 2662014 2663906 -1 ATP-dependent helicase Proteus mirabilis HI4320
20 group_188 PMI_RS16455 3627528 3629549 1 rep DNA helicase Rep Proteus mirabilis HI4320
21 group_1350 PMI_RS16615 3661795 3663951 1 uvrD DNA helicase II Proteus mirabilis HI4320