COG0210
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0210, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 22 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Superfamily I DNA or RNA helicase |
---|---|
Function(s) descr. | Replication, recombination and repair (L) |
Occurence in the database
COG0210 is associated with 22 different proteins (see tab "Protein list" and "Profile") |
The 22 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1262 | FBDBKF_07360 | 157341 | 159395 | 1 | helD | DNA helicase IV | Morganella morganii S1 |
1 | group_188 | FBDBKF_08195 | 14395 | 16425 | 1 | rep | DNA helicase Rep | Morganella morganii S1 |
2 | group_1350 | FBDBKF_08365 | 47532 | 49694 | 1 | uvrD | DNA helicase II | Morganella morganii S1 |
3 | group_1262 | EHELCC_03610 | 26791 | 28845 | -1 | helD | DNA helicase IV | Morganella morganii S2 |
4 | group_1350 | EHELCC_13160 | 114031 | 116193 | -1 | uvrD | DNA helicase II | Morganella morganii S2 |
5 | group_188 | EHELCC_13330 | 147300 | 149330 | -1 | rep | DNA helicase Rep | Morganella morganii S2 |
6 | group_1262 | NLDBIP_03610 | 26587 | 28641 | -1 | helD | DNA helicase IV | Morganella morganii S4 |
7 | group_1350 | NLDBIP_13500 | 114031 | 116193 | -1 | uvrD | DNA helicase II | Morganella morganii S4 |
8 | group_188 | NLDBIP_13670 | 147300 | 149330 | -1 | rep | DNA helicase Rep | Morganella morganii S4 |
9 | group_1262 | LHKJJB_09440 | 26701 | 28755 | -1 | helD | DNA helicase IV | Morganella morganii S3 |
10 | group_188 | LHKJJB_12885 | 13113 | 15143 | 1 | rep | DNA helicase Rep | Morganella morganii S3 |
11 | group_1350 | LHKJJB_13055 | 46250 | 48412 | 1 | uvrD | DNA helicase II | Morganella morganii S3 |
12 | group_1262 | HKOGLL_09535 | 162297 | 164351 | 1 | helD | DNA helicase IV | Morganella morganii S5 |
13 | group_1350 | HKOGLL_11975 | 114031 | 116193 | -1 | uvrD | DNA helicase II | Morganella morganii S5 |
14 | group_188 | HKOGLL_12145 | 147300 | 149330 | -1 | rep | DNA helicase Rep | Morganella morganii S5 |
15 | group_1262 | F4V73_RS01545 | 345816 | 347870 | 1 | helD | DNA helicase IV | Morganella psychrotolerans |
16 | group_1350 | F4V73_RS09565 | 12237 | 14408 | 1 | uvrD | DNA helicase II | Morganella psychrotolerans |
17 | group_188 | F4V73_RS18740 | 15282 | 17303 | 1 | rep | DNA helicase Rep | Morganella psychrotolerans |
18 | group_1262 | PMI_RS03875 | 878588 | 880639 | 1 | helD | DNA helicase IV | Proteus mirabilis HI4320 |
19 | group_188 | PMI_RS12040 | 2662014 | 2663906 | -1 | ATP-dependent helicase | Proteus mirabilis HI4320 | |
20 | group_188 | PMI_RS16455 | 3627528 | 3629549 | 1 | rep | DNA helicase Rep | Proteus mirabilis HI4320 |
21 | group_1350 | PMI_RS16615 | 3661795 | 3663951 | 1 | uvrD | DNA helicase II | Proteus mirabilis HI4320 |