Orthogroup:group_188


Homologs in group_188

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08195 FBDBKF_08195 Morganella morganii S1 rep DNA helicase Rep
EHELCC_13330 EHELCC_13330 Morganella morganii S2 rep DNA helicase Rep
NLDBIP_13670 NLDBIP_13670 Morganella morganii S4 rep DNA helicase Rep
LHKJJB_12885 LHKJJB_12885 Morganella morganii S3 rep DNA helicase Rep
HKOGLL_12145 HKOGLL_12145 Morganella morganii S5 rep DNA helicase Rep
F4V73_RS18740 F4V73_RS18740 Morganella psychrotolerans rep DNA helicase Rep
PMI_RS12040 PMI_RS12040 Proteus mirabilis HI4320 - ATP-dependent helicase
PMI_RS12245 PMI_RS12245 Proteus mirabilis HI4320 - UvrD-helicase domain-containing protein
PMI_RS16455 PMI_RS16455 Proteus mirabilis HI4320 rep DNA helicase Rep

Distribution of group_188 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_188 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_188

Orthogroup content: 9 members

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This page summarizes the annotation of all members of the orthologous group group_188.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rep 7
2 - 2

Product

# Product Occurence
1 DNA helicase Rep 7
2 ATP-dependent helicase 1
3 UvrD-helicase domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0210 8 L Replication, recombination and repair (L) Superfamily I DNA or RNA helicase
COG3972 1 L Replication, recombination and repair (L) Superfamily I DNA and RNA helicases

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03656 7 ATP-dependent DNA helicase Rep [EC:5.6.2.4] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00580 9 UvrD/REP helicase N-terminal domain
PF13361 9 UvrD-like helicase C-terminal domain

Annotations of the 202 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase HMI1, mitochondrial 1
ATP-dependent DNA helicase PcrA 12
ATP-dependent DNA helicase Rep 6
ATP-dependent DNA helicase SRS2 1
ATP-dependent DNA helicase SRS2-like protein At4g25120 1
ATP-dependent DNA helicase UvrD1 4
ATP-dependent DNA helicase UvrD2 4
ATP-dependent DNA helicase srs2 1
ATP-dependent helicase/deoxyribonuclease subunit B 3
ATP-dependent helicase/nuclease subunit A 138
DNA helicase II 4
DNA helicase IV 2
Exonuclease/helicase subunit RexA 2
Gabija protein GajB 2
Probable DNA helicase II homolog 7
Probable DNA helicase MPN_340 1
Putative ATP-dependent DNA helicase YjcD 1
RecBCD enzyme subunit RecB 12

Protein length

Min length 630
Max length 708
Mean length (sd) 673.8 (19.7)
Median length 676.0

Protein length distribution