Homologs in group_1113

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06345 FBDBKF_06345 57.9 Morganella morganii S1 ygiD 4,5-DOPA dioxygenase extradiol
EHELCC_09390 EHELCC_09390 57.9 Morganella morganii S2 ygiD 4,5-DOPA dioxygenase extradiol
NLDBIP_09770 NLDBIP_09770 57.9 Morganella morganii S4 ygiD 4,5-DOPA dioxygenase extradiol
LHKJJB_07985 LHKJJB_07985 57.9 Morganella morganii S3 ygiD 4,5-DOPA dioxygenase extradiol
HKOGLL_07535 HKOGLL_07535 57.9 Morganella morganii S5 ygiD 4,5-DOPA dioxygenase extradiol
F4V73_RS15575 F4V73_RS15575 55.6 Morganella psychrotolerans ygiD 4,5-DOPA dioxygenase extradiol

Distribution of the homologs in the orthogroup group_1113

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1113

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24197 2.12e-95 284 53 2 263 1 ygiD 4,5-DOPA dioxygenase extradiol Escherichia coli (strain K12)
Q949R4 7.26e-47 160 37 4 246 2 LIGB Extradiol ring-cleavage dioxygenase Arabidopsis thaliana
Q70FG7 9.02e-41 144 35 5 258 1 DODA 4,5-DOPA dioxygenase extradiol Beta vulgaris
I3PFJ9 6.94e-39 139 32 4 264 2 DODA1 4,5-DOPA dioxygenase extradiol 1 Beta vulgaris
I3PFJ3 1.05e-38 139 32 4 264 2 DODA1 4,5-DOPA dioxygenase extradiol 1 Beta vulgaris
Q7XA48 2.68e-35 130 34 7 261 1 DODA 4,5-DOPA dioxygenase extradiol Portulaca grandiflora
B6F0W8 9.27e-34 126 33 5 243 1 DOD 4,5-DOPA dioxygenase extradiol Mirabilis jalapa
A0A0F7CUE8 2.32e-31 121 29 8 277 1 tasH Dioxygenase tasH Hapsidospora irregularis
O74741 2.61e-20 91 29 10 257 3 SPBC1709.16c 4,5-DOPA dioxygenase extradiol-like protein Schizosaccharomyces pombe (strain 972 / ATCC 24843)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11635
Feature type CDS
Gene ygiD
Product 4,5-DOPA dioxygenase extradiol
Location 2571138 - 2571923 (strand: -1)
Length 786 (nucleotides) / 261 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1113
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3384 Secondary metabolites biosynthesis, transport and catabolism (Q) Q Aromatic ring-opening dioxygenase, catalytic subunit, LigB family

Kegg Ortholog Annotation(s)

Protein Sequence

MDRKLMPALFVGHGSPMNVLEDNKYTRLWTTLGETLPKPKAILVISAHWYTQGTYITAMTHPKTIHDFYGFPPELYQIEYPAKGSIGLVALIEDLIDPMKLKLDMEQWGFDHGSWGILEKMYPNANIPVVQLSIDANQSPQWHYEFGKKLVELRREGVLVIGSGNIVHNLRMMDWQNDQAEPYSWALSFSETVERCLQSDKVPEALFTILSTQEGQLAHPTAEHFLPALYLLGLKQPDEKVTLLNNDIINKSLSMMTFQIG

Flanking regions ( +/- flanking 50bp)

AGAAGGCAGTATGCTAAATGCCATAGATAGCAAGATGATAAGAGGTGATTATGGACAGAAAATTGATGCCAGCGCTATTTGTTGGACATGGCAGTCCAATGAATGTATTGGAAGATAATAAATATACTCGCCTCTGGACGACGTTAGGAGAGACACTGCCTAAGCCTAAAGCAATATTAGTCATCTCAGCGCATTGGTATACGCAAGGGACTTATATTACAGCGATGACTCATCCTAAAACAATTCATGATTTTTATGGATTTCCACCAGAGTTATACCAAATAGAATATCCTGCAAAAGGCTCCATTGGTCTCGTTGCATTAATTGAAGATCTGATTGATCCGATGAAATTAAAACTGGATATGGAGCAATGGGGATTCGATCACGGTAGTTGGGGAATATTAGAGAAGATGTACCCTAATGCTAATATTCCTGTTGTTCAGTTAAGTATTGATGCTAACCAATCGCCACAGTGGCACTATGAGTTTGGAAAAAAACTGGTTGAACTACGTAGAGAAGGTGTATTAGTGATTGGCAGTGGAAATATCGTTCATAATTTAAGAATGATGGATTGGCAAAATGACCAAGCAGAGCCTTACTCTTGGGCATTATCTTTTAGTGAAACAGTAGAGCGCTGTTTACAAAGTGATAAAGTGCCTGAAGCGCTTTTTACCATTTTATCAACGCAAGAAGGGCAACTCGCACACCCAACAGCAGAACATTTTTTACCTGCATTATATCTACTCGGTTTAAAACAGCCGGATGAAAAAGTAACTTTATTAAATAATGATATTATTAATAAATCACTTAGCATGATGACCTTTCAAATTGGGTAAAATATTCAATAAAACTAATTGATAGAATGTTAAGCCTAAATTTATTTTTT