Homologs in group_1175

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06345 FBDBKF_06345 100.0 Morganella morganii S1 ygiD 4,5-DOPA dioxygenase extradiol
EHELCC_09390 EHELCC_09390 100.0 Morganella morganii S2 ygiD 4,5-DOPA dioxygenase extradiol
NLDBIP_09770 NLDBIP_09770 100.0 Morganella morganii S4 ygiD 4,5-DOPA dioxygenase extradiol
LHKJJB_07985 LHKJJB_07985 100.0 Morganella morganii S3 ygiD 4,5-DOPA dioxygenase extradiol
F4V73_RS15575 F4V73_RS15575 85.3 Morganella psychrotolerans ygiD 4,5-DOPA dioxygenase extradiol
PMI_RS11635 PMI_RS11635 57.9 Proteus mirabilis HI4320 ygiD 4,5-DOPA dioxygenase extradiol

Distribution of the homologs in the orthogroup group_1175

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1175

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24197 2.11e-114 332 60 2 259 1 ygiD 4,5-DOPA dioxygenase extradiol Escherichia coli (strain K12)
Q949R4 1.82e-51 172 39 7 241 2 LIGB Extradiol ring-cleavage dioxygenase Arabidopsis thaliana
I3PFJ9 2.75e-40 143 36 6 235 2 DODA1 4,5-DOPA dioxygenase extradiol 1 Beta vulgaris
I3PFJ3 5.27e-40 142 36 6 235 2 DODA1 4,5-DOPA dioxygenase extradiol 1 Beta vulgaris
Q70FG7 1.57e-39 141 38 8 236 1 DODA 4,5-DOPA dioxygenase extradiol Beta vulgaris
B6F0W8 9.04e-35 128 35 6 231 1 DOD 4,5-DOPA dioxygenase extradiol Mirabilis jalapa
Q7XA48 4.26e-34 127 34 7 235 1 DODA 4,5-DOPA dioxygenase extradiol Portulaca grandiflora
A0A0F7CUE8 1.63e-21 94 34 5 186 1 tasH Dioxygenase tasH Hapsidospora irregularis
O74741 7.23e-16 79 25 9 259 3 SPBC1709.16c 4,5-DOPA dioxygenase extradiol-like protein Schizosaccharomyces pombe (strain 972 / ATCC 24843)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_07535
Feature type CDS
Gene ygiD
Product 4,5-DOPA dioxygenase extradiol
Location 112406 - 113185 (strand: 1)
Length 780 (nucleotides) / 259 (amino acids)
In genomic island -

Contig

Accession ZDB_684
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1175
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3384 Secondary metabolites biosynthesis, transport and catabolism (Q) Q Aromatic ring-opening dioxygenase, catalytic subunit, LigB family

Kegg Ortholog Annotation(s)

Protein Sequence

MKRLPALFAGHGSPMNVLETNRYTETWRQLGEEIPRPSAILVISAHWYTQGAWLTSAAHPRTIHDFRGFPPALHETEYPAPGSSALVARVKDLLSDDNIGEDHGEWGLDHGSWGILVKMYPDADIPVVQLSLDGSKPAQWHYDTGRKLAALRDEGVLVLGSGNVVHNLREMDWQNAQAEPYPWAVSFNNFVRDNLESDARPHPLVNALEREDGKRSNPSPEHYLPLLYILGMRQGSELVTVPVDGIESGSLSMLTVKVG

Flanking regions ( +/- flanking 50bp)

CGGAATGGCATACACTGATCTCAGTGAACAATTTTTGTGTGAGGTCAGCAATGAAACGATTACCGGCTCTGTTTGCGGGTCACGGCAGCCCGATGAATGTCCTGGAAACCAACCGTTATACCGAAACCTGGCGGCAACTGGGAGAGGAGATACCGCGTCCGTCCGCCATTCTGGTGATTTCCGCGCACTGGTATACACAGGGGGCGTGGCTGACATCTGCCGCACACCCGCGCACCATCCATGATTTTCGCGGTTTTCCGCCTGCGCTGCATGAAACGGAATATCCGGCTCCCGGATCATCTGCGCTGGTGGCGCGGGTAAAAGATCTGCTCAGTGATGATAATATCGGGGAAGATCACGGTGAGTGGGGGTTAGATCACGGCAGCTGGGGGATCTTAGTGAAAATGTATCCGGATGCGGATATTCCGGTGGTGCAGCTCAGCCTTGACGGCAGCAAACCGGCACAGTGGCATTATGATACCGGCCGTAAACTGGCGGCGCTGCGTGATGAAGGTGTGCTGGTGCTCGGCAGCGGTAATGTGGTGCATAATCTGCGTGAGATGGACTGGCAGAATGCGCAGGCCGAACCGTATCCGTGGGCAGTGAGTTTTAATAATTTTGTGCGTGATAACCTGGAGAGCGACGCCCGGCCGCATCCGCTGGTGAATGCACTTGAGCGCGAAGACGGCAAACGGTCGAATCCGTCACCGGAACATTATCTGCCACTGCTCTATATTCTCGGTATGCGGCAGGGCAGCGAGCTGGTCACCGTACCGGTGGATGGTATTGAATCCGGCTCACTGAGTATGCTGACAGTCAAAGTCGGCTGACGATTTCTTTTGTCATAAAAAATCCCCGGGACATCTGATGTACCGGGGAT