COG3384


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3384, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Aromatic ring-opening dioxygenase, catalytic subunit, LigB family
Function(s) descr. Secondary metabolites biosynthesis, transport and catabolism (Q)

Occurence in the database

COG3384 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1113 FBDBKF_06345 103481 104260 -1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S1
1 group_1113 EHELCC_09390 104053 104832 -1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S2
2 group_1113 NLDBIP_09770 104053 104832 -1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S4
3 group_1113 LHKJJB_07985 112406 113185 1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S3
4 group_1113 HKOGLL_07535 112406 113185 1 ygiD 4,5-DOPA dioxygenase extradiol Morganella morganii S5
5 group_1113 F4V73_RS15575 109818 110597 1 ygiD 4,5-DOPA dioxygenase extradiol Morganella psychrotolerans
6 group_1113 PMI_RS11635 2571138 2571923 -1 ygiD 4,5-DOPA dioxygenase extradiol Proteus mirabilis HI4320