Orthogroup:group_1113


Homologs in group_1113

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06345 FBDBKF_06345 Morganella morganii S1 ygiD 4,5-DOPA dioxygenase extradiol
EHELCC_09390 EHELCC_09390 Morganella morganii S2 ygiD 4,5-DOPA dioxygenase extradiol
NLDBIP_09770 NLDBIP_09770 Morganella morganii S4 ygiD 4,5-DOPA dioxygenase extradiol
LHKJJB_07985 LHKJJB_07985 Morganella morganii S3 ygiD 4,5-DOPA dioxygenase extradiol
HKOGLL_07535 HKOGLL_07535 Morganella morganii S5 ygiD 4,5-DOPA dioxygenase extradiol
F4V73_RS15575 F4V73_RS15575 Morganella psychrotolerans ygiD 4,5-DOPA dioxygenase extradiol
PMI_RS11635 PMI_RS11635 Proteus mirabilis HI4320 ygiD 4,5-DOPA dioxygenase extradiol

Distribution of group_1113 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1113 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1113

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1113.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ygiD 7

Product

# Product Occurence
1 4,5-DOPA dioxygenase extradiol 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3384 7 Q Secondary metabolites biosynthesis, transport and catabolism (Q) Aromatic ring-opening dioxygenase, catalytic subunit, LigB family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15777 7 4,5-DOPA dioxygenase extradiol [EC:1.13.11.-] Betalain biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites		 Betacyanin biosynthesis, L-tyrosine => amaranthin

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02900 7 Catalytic LigB subunit of aromatic ring-opening dioxygenase

Annotations of the 9 SwissProt hits

Annotation Number of occurrences
4,5-DOPA dioxygenase extradiol 4
4,5-DOPA dioxygenase extradiol 1 2
4,5-DOPA dioxygenase extradiol-like protein 1
Dioxygenase tasH 1
Extradiol ring-cleavage dioxygenase 1

Protein length

Min length 259
Max length 261
Mean length (sd) 259.3 (0.8)
Median length 259.0

Protein length distribution