Homologs in group_1111

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06335 FBDBKF_06335 68.3 Morganella morganii S1 ygiB DUF1190 domain-containing protein
EHELCC_09380 EHELCC_09380 68.3 Morganella morganii S2 ygiB DUF1190 domain-containing protein
NLDBIP_09760 NLDBIP_09760 68.3 Morganella morganii S4 ygiB DUF1190 domain-containing protein
LHKJJB_07995 LHKJJB_07995 68.3 Morganella morganii S3 ygiB DUF1190 domain-containing protein
HKOGLL_07545 HKOGLL_07545 68.3 Morganella morganii S5 ygiB DUF1190 domain-containing protein
F4V73_RS15585 F4V73_RS15585 63.9 Morganella psychrotolerans - DUF1190 family protein

Distribution of the homologs in the orthogroup group_1111

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1111

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N0D4 8.4e-102 298 66 3 224 3 plu3956 UPF0441 protein plu3956 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A9MPX4 2.52e-93 276 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B4T657 5.02e-93 275 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella newport (strain SL254)
Q7CPS1 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XGZ1 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella typhi
B4TVR9 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella schwarzengrund (strain CVM19633)
C0PYV8 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella paratyphi C (strain RKS4594)
A9N5W3 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B5FV55 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella dublin (strain CT_02021853)
Q57JS5 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella choleraesuis (strain SC-B67)
B5F680 1.42e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella agona (strain SL483)
B5BFZ9 1.55e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella paratyphi A (strain AKU_12601)
Q5PMT8 1.55e-92 274 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4TI37 2.56e-92 273 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella heidelberg (strain SL476)
B5QZ24 7.23e-92 272 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella enteritidis PT4 (strain P125109)
B1ISC0 1.86e-90 269 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
Q3YXK4 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Shigella sonnei (strain Ss046)
P0ADT4 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Shigella flexneri
Q0T0M1 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Shigella flexneri serotype 5b (strain 8401)
Q1R6U6 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli (strain UTI89 / UPEC)
B1LF30 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli (strain SMS-3-5 / SECEC)
B6I408 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli (strain SE11)
P0ADT2 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli (strain K12)
P0ADT3 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1AFV9 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O1:K1 / APEC
A8A4J3 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O9:H4 (strain HS)
C4ZQV5 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli (strain K12 / MC4100 / BW2952)
B5YR82 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XBP4 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O157:H7
B7UIU7 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZRR9 2.24e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O139:H28 (strain E24377A / ETEC)
Q0TD68 2.94e-90 268 57 3 234 3 ygiB UPF0441 protein YgiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q32BU3 1.84e-89 266 57 3 234 3 ygiB UPF0441 protein YgiB Shigella dysenteriae serotype 1 (strain Sd197)
B2U1E4 1.95e-89 266 57 3 234 3 ygiB UPF0441 protein YgiB Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q31WZ5 2.82e-89 266 56 3 234 3 ygiB UPF0441 protein YgiB Shigella boydii serotype 4 (strain Sb227)
B5REE6 1.22e-88 264 58 3 234 3 ygiB UPF0441 protein YgiB Salmonella gallinarum (strain 287/91 / NCTC 13346)
Q2NWD5 2.11e-86 258 57 1 224 3 SG0265 UPF0441 protein SG0265 Sodalis glossinidius (strain morsitans)
Q7CGH1 4.89e-85 255 59 3 231 3 YPO0661 UPF0441 protein YPO0661/y3517/YP_2976 Yersinia pestis
Q1CMC8 4.89e-85 255 59 3 231 3 YPN_0520 UPF0441 protein YPN_0520 Yersinia pestis bv. Antiqua (strain Nepal516)
Q665V9 4.89e-85 255 59 3 231 3 YPTB3401 UPF0441 protein YPTB3401 Yersinia pseudotuberculosis serotype I (strain IP32953)
Q1C380 4.89e-85 255 59 3 231 3 YPA_3130 UPF0441 protein YPA_3130 Yersinia pestis bv. Antiqua (strain Antiqua)
B5XU47 3.94e-82 248 56 4 235 3 KPK_0672 UPF0441 protein KPK_0672 Klebsiella pneumoniae (strain 342)
A6TE25 4.25e-82 248 56 4 235 3 KPN78578_33850 UPF0441 protein KPN78578_33850 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A1JQU7 4.81e-82 248 59 2 230 3 YE3666 UPF0441 protein YE3666 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8GJS8 5.6e-79 239 59 4 222 3 Spro_4274 UPF0441 protein Spro_4274 Serratia proteamaculans (strain 568)
A8APS2 1.43e-78 238 58 3 234 3 CKO_04429 UPF0441 protein CKO_04429 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q6DAC6 2.58e-78 238 61 3 223 3 ECA0329 UPF0441 protein ECA0329 Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C6DIS1 5.98e-78 237 60 3 223 3 PC1_0312 UPF0441 protein PC1_0312 Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B2VGH5 1.63e-75 231 54 4 242 3 ETA_04310 UPF0441 protein ETA_04310 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11625
Feature type CDS
Gene -
Product DUF1190 family protein
Location 2569099 - 2569827 (strand: 1)
Length 729 (nucleotides) / 242 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1111
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06693 Protein of unknown function (DUF1190)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5463 Function unknown (S) S Uncharacterized conserved protein YgiB, UPF0441/DUF1190 family, involved in bioifilm formation

Protein Sequence

MTMKRTKSINRDAFRKAFRPYRLAPVAIAITAVFALSGCEESDETVSLYMNAQECAQANPSQAAQCEDSYRTALQEAQRTAPKYATMEDCVAEFGDAQCTQTASIDGNPVNTENANNLNPDSSQMAQANSGGSFFMPLMAGYMMGRLMGGGAPAQPLFSSRNPSSPANGKFVDATGRNYGPAVGGRQMNVPKTAMTPKPSTTSTITRGGFGNTVSRQAAAQRASATNNNRSSTGSSSYRAGG

Flanking regions ( +/- flanking 50bp)

CTATCCTAGCTTTTATTTTGAACGTTTTACTTTTTATGGATCTTACCAATATGACAATGAAACGTACCAAATCGATTAATCGCGATGCTTTTCGTAAAGCATTTCGCCCTTATCGTCTGGCGCCTGTTGCCATCGCCATCACCGCGGTATTCGCCCTTTCAGGGTGTGAAGAGAGTGATGAGACGGTTTCACTGTATATGAATGCACAAGAATGTGCGCAAGCGAATCCATCACAAGCAGCACAATGTGAAGATTCTTACCGCACGGCATTACAAGAAGCGCAACGTACTGCACCTAAATACGCAACAATGGAAGATTGTGTTGCTGAATTTGGTGATGCGCAATGTACACAAACTGCCTCAATTGATGGTAACCCCGTTAACACCGAAAACGCCAATAACCTCAACCCTGATAGTTCACAAATGGCACAAGCTAACTCTGGTGGTAGCTTCTTTATGCCACTGATGGCAGGTTATATGATGGGGCGTTTAATGGGTGGTGGCGCACCAGCACAGCCTTTATTTAGCTCGCGTAATCCAAGCAGCCCAGCTAATGGTAAGTTTGTTGATGCAACGGGTCGTAACTATGGTCCTGCTGTCGGTGGTCGTCAAATGAACGTCCCTAAAACAGCTATGACTCCAAAACCATCTACAACATCAACCATTACGCGTGGTGGCTTTGGTAATACCGTTTCACGACAAGCGGCAGCTCAACGTGCAAGCGCGACGAATAACAACCGTAGCTCAACAGGCTCCTCTTCATATCGTGCAGGTGGTTAATTAAACCATGAAACGCGAACAAATTATTGAACGTCCTGATTGGCGCGAAA