Homologs in group_1092

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06210 FBDBKF_06210 73.2 Morganella morganii S1 thiB thiamine ABC transporter substrate binding subunit
EHELCC_09255 EHELCC_09255 73.2 Morganella morganii S2 thiB thiamine ABC transporter substrate binding subunit
NLDBIP_09635 NLDBIP_09635 73.2 Morganella morganii S4 thiB thiamine ABC transporter substrate binding subunit
LHKJJB_08120 LHKJJB_08120 73.2 Morganella morganii S3 thiB thiamine ABC transporter substrate binding subunit
HKOGLL_07670 HKOGLL_07670 73.2 Morganella morganii S5 thiB thiamine ABC transporter substrate binding subunit
F4V73_RS15705 F4V73_RS15705 72.9 Morganella psychrotolerans thiB thiamine ABC transporter substrate binding subunit

Distribution of the homologs in the orthogroup group_1092

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1092

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31550 1.88e-160 453 66 0 309 1 thiB Thiamine-binding periplasmic protein Escherichia coli (strain K12)
Q7CR85 4.88e-160 452 66 0 309 1 thiB Thiamine-binding periplasmic protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8FYV1 2.7e-126 367 52 1 315 3 thiB Thiamine-binding periplasmic protein Brucella suis biovar 1 (strain 1330)
Q57BC4 2.98e-125 364 52 1 315 3 thiB Thiamine-binding periplasmic protein Brucella abortus biovar 1 (strain 9-941)
Q2YLW8 2.98e-125 364 52 1 315 3 thiB Thiamine-binding periplasmic protein Brucella abortus (strain 2308)
Q8YJ02 5.62e-125 363 51 1 315 3 thiB Thiamine-binding periplasmic protein Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P44984 1.39e-95 289 43 6 321 3 thiB Thiamine-binding periplasmic protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8DLH9 9.4e-07 53 19 10 286 2 idiA Iron deficiency-induced protein A Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11485
Feature type CDS
Gene thiB
Product thiamine ABC transporter substrate binding subunit
Location 2530367 - 2531332 (strand: 1)
Length 966 (nucleotides) / 321 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1092
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01547 Bacterial extracellular solute-binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4143 Coenzyme transport and metabolism (H) H ABC-type thiamine transport system, periplasmic component TbpA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02064 thiamine transport system substrate-binding protein ABC transporters -

Protein Sequence

MFSAFATNAQQTKPTLTVYTYDSFTADWGPGPAIKKAFEQQCDCELKLVALSDGVSLLNRLRMEGSKSKADIILGLDNNLIHAAKQTGLFAPSNIDTSKLALPEKWTDDTFVPYDYGYFAFIYDKNRITHPPKSMDELLNSQQPWKILYQDPRTSTPGLGLMLWMQSLYPNNTAEQWQKLANKTLTVTKGWSESYGLFLKGEGDFVLSYTSSPGYHILADKKDNYAAAIFDEGHYLQVEVAAKLKSSKQPELAQQFMQFMLTPAFQETIPTTNWMYPVIDMPLPEVYSVMPKPQKSLQFDADVVAKERQTWTRNWQSAVSR

Flanking regions ( +/- flanking 50bp)

GCGTGTTAATAAATTCTCTTCGTTCAACTCTCTTATTCAGTGCACTAGGTTTGTTCAGTGCTTTTGCCACAAATGCACAACAAACCAAACCCACACTTACCGTCTATACCTATGACTCTTTTACCGCGGATTGGGGGCCTGGTCCGGCAATTAAAAAAGCATTTGAACAACAATGTGATTGTGAGCTAAAACTGGTTGCCCTTTCGGATGGGGTTTCTCTCCTTAATCGTTTACGTATGGAAGGGAGTAAAAGTAAGGCAGATATTATTTTAGGGCTAGATAACAATCTTATTCATGCGGCAAAACAGACCGGACTTTTTGCACCAAGCAATATTGATACATCAAAACTAGCATTACCTGAAAAATGGACTGATGACACTTTTGTGCCTTATGACTACGGTTATTTCGCTTTTATTTACGATAAAAATCGTATTACTCATCCCCCTAAAAGCATGGATGAGCTGTTAAATAGCCAACAGCCGTGGAAAATCCTTTATCAAGATCCACGTACCAGTACCCCCGGCTTAGGCTTAATGTTATGGATGCAATCACTGTATCCAAACAATACCGCTGAGCAGTGGCAAAAATTGGCGAATAAAACACTGACAGTAACCAAAGGCTGGAGTGAGTCCTATGGCTTATTCTTGAAAGGAGAAGGGGATTTTGTGCTTAGTTACACCTCATCTCCGGGCTACCATATTTTGGCTGATAAAAAAGACAATTATGCGGCAGCTATTTTTGATGAAGGACACTATTTACAGGTAGAAGTTGCAGCCAAGCTAAAATCCAGCAAACAGCCAGAATTAGCTCAGCAATTTATGCAATTTATGCTAACCCCCGCTTTCCAAGAAACCATCCCAACCACTAATTGGATGTATCCTGTTATTGATATGCCACTACCTGAGGTCTACTCCGTTATGCCTAAACCGCAAAAGTCATTACAATTTGATGCTGATGTGGTAGCCAAAGAGCGCCAAACATGGACACGTAATTGGCAATCTGCGGTTAGCCGCTAATGGGTAAATGGCTTATCCCGGGGCTATGCGCCTCGGGATTATTACTTACC