COG4143


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4143, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type thiamine transport system, periplasmic component TbpA
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG4143 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1092 FBDBKF_06210 70990 72000 1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S1
1 group_1092 EHELCC_09255 71562 72572 1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S2
2 group_1092 NLDBIP_09635 71562 72572 1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S4
3 group_1092 LHKJJB_08120 144666 145676 -1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S3
4 group_1092 HKOGLL_07670 144666 145676 -1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S5
5 group_1092 F4V73_RS15705 142220 143236 -1 thiB thiamine ABC transporter substrate binding subunit Morganella psychrotolerans
6 group_1092 PMI_RS11485 2530367 2531332 1 thiB thiamine ABC transporter substrate binding subunit Proteus mirabilis HI4320