Homologs in group_1786

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13025 FBDBKF_13025 76.1 Morganella morganii S1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
EHELCC_06340 EHELCC_06340 76.1 Morganella morganii S2 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
NLDBIP_06660 NLDBIP_06660 76.1 Morganella morganii S4 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
LHKJJB_03540 LHKJJB_03540 76.1 Morganella morganii S3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
HKOGLL_07015 HKOGLL_07015 76.1 Morganella morganii S5 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
F4V73_RS16210 F4V73_RS16210 75.5 Morganella psychrotolerans ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK

Distribution of the homologs in the orthogroup group_1786

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1786

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37174 5.08e-77 229 71 0 159 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AAR4 2.16e-75 224 71 0 159 3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Shigella flexneri
P0AAR3 2.16e-75 224 71 0 159 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Escherichia coli (strain K12)
P45202 2.06e-63 194 62 0 158 1 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36922 3.13e-27 102 36 2 154 3 EF_1730 Putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase EbsC Enterococcus faecalis (strain ATCC 700802 / V583)
O31650 5e-25 97 40 2 154 3 yjdI Putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YjdI Bacillus subtilis (strain 168)
P71000 3.25e-05 45 25 2 114 4 ywhH Uncharacterized protein YwhH Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10725
Feature type CDS
Gene ybaK
Product Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
Location 2359247 - 2359726 (strand: 1)
Length 480 (nucleotides) / 159 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1786
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04073 Aminoacyl-tRNA editing domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2606 Translation, ribosomal structure and biogenesis (J) J Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03976 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] - -

Protein Sequence

MTPAVNLLEKQKIKFTLHPYEHDANVHNFGDEAVEKLGLDNRQVFKTLLVALNGDAKNLAVAVTPVSSQLDLKRVAKCLKAKKAEMADPQIAQKVTGYLVGGISPLGQKKRLPTVIDDQALKFDTIYVSGGKRGLDIELTAEDLCSVLGAQFALIRKED

Flanking regions ( +/- flanking 50bp)

TAACAAGATCACGTTCACCATTGCTCTCACCTTATTGAGTAGGAATAATTATGACTCCCGCAGTGAATTTACTGGAAAAACAAAAAATTAAATTTACTCTTCACCCTTATGAACATGATGCGAATGTACATAACTTTGGTGATGAAGCCGTTGAAAAGTTAGGGCTAGATAACCGTCAAGTGTTTAAAACGCTTCTCGTTGCGTTAAATGGTGATGCTAAAAACCTAGCCGTTGCGGTCACCCCAGTATCAAGTCAACTTGACTTAAAACGAGTCGCCAAATGCCTTAAAGCTAAAAAAGCAGAAATGGCCGATCCACAAATAGCACAAAAAGTAACAGGTTATTTAGTCGGCGGTATAAGCCCATTAGGACAAAAAAAGCGCCTTCCCACGGTGATTGATGATCAAGCACTTAAGTTTGACACTATCTATGTCTCAGGAGGTAAGCGAGGGCTGGATATTGAACTAACGGCTGAAGATTTATGTTCAGTATTAGGTGCACAATTTGCCCTGATCCGTAAAGAGGATTAAGAGTAACAGATTGCTTATTTTAGGCTTTTATATCAACCAAGCTGCCAATA