Homologs in group_1781

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12985 FBDBKF_12985 58.4 Morganella morganii S1 ybbJ Membrane protein implicated in regulation of membrane protease activity
EHELCC_06300 EHELCC_06300 58.4 Morganella morganii S2 ybbJ Membrane protein implicated in regulation of membrane protease activity
NLDBIP_06620 NLDBIP_06620 58.4 Morganella morganii S4 ybbJ Membrane protein implicated in regulation of membrane protease activity
LHKJJB_03500 LHKJJB_03500 58.4 Morganella morganii S3 ybbJ Membrane protein implicated in regulation of membrane protease activity
HKOGLL_06975 HKOGLL_06975 58.4 Morganella morganii S5 ybbJ Membrane protein implicated in regulation of membrane protease activity
F4V73_RS16170 F4V73_RS16170 59.1 Morganella psychrotolerans - NfeD family protein

Distribution of the homologs in the orthogroup group_1781

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1781

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAS4 1.36e-36 127 47 1 151 3 ybbJ Inner membrane protein YbbJ Shigella flexneri
P0AAS3 1.36e-36 127 47 1 151 1 ybbJ Inner membrane protein YbbJ Escherichia coli (strain K12)
Q58236 3.48e-05 45 23 2 113 4 MJ0826 Uncharacterized protein MJ0826 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10700
Feature type CDS
Gene -
Product NfeD family protein
Location 2352299 - 2352820 (strand: 1)
Length 522 (nucleotides) / 173 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1781
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01957 NfeD-like C-terminal, partner-binding

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1585 Posttranslational modification, protein turnover, chaperones (O) O Membrane protein implicated in regulation of membrane protease activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07340 inner membrane protein - -

Protein Sequence

MIEWISAQPALFWLCLGVLLLIAEMLGTAGYLLWSGMAALCVALIAWILPIGWPIQGILFALLTVISAILWRIWLKRKKLSKEAENLNQKSHQLIGIKAVLLSDTENGFSRIKLADGSWRVYSDTPLKAGDTVKVIAIDGITLHVTSFSPTTRSASSTQHAAVIDDDNNQKDD

Flanking regions ( +/- flanking 50bp)

GAATTATTAAATACCAAAAAAAGTGACTCAGGTAACAAGAGCAATTAATTATGATTGAATGGATTAGTGCTCAGCCAGCACTTTTCTGGCTTTGTCTTGGTGTCTTACTATTAATCGCCGAAATGCTGGGCACTGCAGGCTACTTACTATGGTCTGGTATGGCCGCATTATGTGTTGCATTAATCGCATGGATCTTACCTATTGGTTGGCCCATTCAAGGTATTCTATTTGCATTACTCACCGTTATTAGTGCAATCCTTTGGCGTATCTGGCTTAAACGCAAAAAGTTATCCAAAGAAGCAGAAAACCTAAACCAAAAAAGCCACCAACTTATTGGTATAAAAGCAGTTTTGTTATCGGATACTGAAAATGGTTTTAGTCGCATAAAGCTTGCTGATGGGAGTTGGCGAGTCTATTCTGACACGCCATTAAAAGCAGGTGATACAGTCAAAGTGATTGCTATTGATGGTATCACCTTGCACGTCACCTCATTTTCTCCCACCACTCGCTCGGCATCATCAACACAGCATGCTGCTGTTATTGATGATGACAACAACCAGAAAGATGATTGATGATTGGGCATTCCGCCCCATCATCGCCAGGGCATTCATTTGCTAATAAG