Homologs in group_1781

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12985 FBDBKF_12985 100.0 Morganella morganii S1 ybbJ Membrane protein implicated in regulation of membrane protease activity
EHELCC_06300 EHELCC_06300 100.0 Morganella morganii S2 ybbJ Membrane protein implicated in regulation of membrane protease activity
NLDBIP_06620 NLDBIP_06620 100.0 Morganella morganii S4 ybbJ Membrane protein implicated in regulation of membrane protease activity
LHKJJB_03500 LHKJJB_03500 100.0 Morganella morganii S3 ybbJ Membrane protein implicated in regulation of membrane protease activity
F4V73_RS16170 F4V73_RS16170 86.0 Morganella psychrotolerans - NfeD family protein
PMI_RS10700 PMI_RS10700 58.4 Proteus mirabilis HI4320 - NfeD family protein

Distribution of the homologs in the orthogroup group_1781

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1781

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAS4 3.85e-34 119 47 2 152 3 ybbJ Inner membrane protein YbbJ Shigella flexneri
P0AAS3 3.85e-34 119 47 2 152 1 ybbJ Inner membrane protein YbbJ Escherichia coli (strain K12)
Q58236 0.000151 42 25 4 139 4 MJ0826 Uncharacterized protein MJ0826 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_06975
Feature type CDS
Gene ybbJ
Product Membrane protein implicated in regulation of membrane protease activity
Location 207665 - 208117 (strand: 1)
Length 453 (nucleotides) / 150 (amino acids)

Contig

Accession ZDB_683
Length 224720 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1781
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01957 NfeD-like C-terminal, partner-binding

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1585 Posttranslational modification, protein turnover, chaperones (O) O Membrane protein implicated in regulation of membrane protease activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07340 inner membrane protein - -

Protein Sequence

MIEMIASQAVWFWLCFGGILLILEMLGTGGYLLWSGVAALVVALLVWIMPGLSLEWQGIIFAVMTVICAVLWRNFQRRRQRNDSSSPNQVNHKLIGLRAALLAETEDGYSRIRLADGSWRVYSQSALPAGTEVEVIAVDGITLTVRAVSR

Flanking regions ( +/- flanking 50bp)

GCTGAAATGTTCAATGTGTCAAAAGACACTAAAGGTCAGGGTAAATCCGCATGATTGAGATGATCGCATCACAGGCGGTCTGGTTCTGGCTCTGTTTCGGCGGCATCCTGCTGATTCTGGAGATGCTCGGTACCGGCGGTTATCTGCTCTGGAGTGGCGTGGCGGCACTGGTTGTCGCGCTTCTGGTGTGGATTATGCCGGGGCTCAGTCTCGAGTGGCAGGGTATTATCTTCGCGGTGATGACGGTGATCTGTGCGGTGTTGTGGCGTAATTTTCAGCGCCGCCGCCAGCGTAATGACAGCAGTTCGCCGAATCAGGTCAATCATAAGCTGATCGGCCTGCGTGCCGCACTGCTGGCAGAGACGGAAGACGGTTACAGCCGCATCCGTCTGGCAGACGGCAGCTGGCGTGTCTACAGCCAGTCGGCACTGCCTGCCGGTACGGAAGTGGAAGTGATTGCCGTTGACGGCATTACACTGACGGTCCGGGCTGTCAGCCGGTAACTGACCGGAAAGACCATCTCAAAACGGCCTCTGGTAACAGAGGCCGTTTT