Homologs in group_353

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14940 FBDBKF_14940 22.7 Morganella morganii S1 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
EHELCC_11305 EHELCC_11305 22.7 Morganella morganii S2 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
NLDBIP_11650 NLDBIP_11650 22.7 Morganella morganii S4 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
LHKJJB_11510 LHKJJB_11510 22.7 Morganella morganii S3 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
HKOGLL_10120 HKOGLL_10120 22.7 Morganella morganii S5 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
PMI_RS14705 PMI_RS14705 24.7 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator
PMI_RS17480 PMI_RS17480 21.2 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator

Distribution of the homologs in the orthogroup group_353

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_353

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8RD36 3.1e-08 57 25 7 236 4 TTE0211 Uncharacterized HTH-type transcriptional regulator TTE0211 Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
P46118 7.48e-08 55 23 7 267 3 hexR HTH-type transcriptional regulator HexR Escherichia coli (strain K12)
P26833 1.67e-07 54 24 5 233 4 CPE0189 Uncharacterized HTH-type transcriptional regulator CPE0189 Clostridium perfringens (strain 13 / Type A)
P44540 1.96e-07 54 23 4 240 4 HI_0143 Uncharacterized HTH-type transcriptional regulator HI_0143 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37767 1.55e-06 52 23 1 156 4 yfhH Uncharacterized HTH-type transcriptional regulator YfhH Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10455
Feature type CDS
Gene -
Product MurR/RpiR family transcriptional regulator
Location 2296223 - 2297047 (strand: 1)
Length 825 (nucleotides) / 274 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_353
Orthogroup size 8
N. genomes 6

Actions

Genomic region

Domains

PF01380 SIS domain
PF01418 Helix-turn-helix domain, rpiR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1737 Transcription (K) K DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains

Protein Sequence

MSTATNLNELQEQVRSRYNGLSKRLQQVAHYLLDNKNSVAFDTIAILADKANVPPSTLIRFANAFHFKGFNEMKLLFQRHLMGEMDNEKLTYKQQYKKEPPNLNEPDYILQEFAQANSHALQQLAHQTHKDMLNKTIQLLEYAETIYIGGFHHSFSAASYFFHALSHIPCETVFVNCLGGMYKEQLRNITHRDVLFGIHFHPYSEEMQKMCEIAAYKEAKQIIVTDSPISPLASLSDVCLTVKEAQIKMFRSQTSTLCLLQALSVAFAFRKKSH

Flanking regions ( +/- flanking 50bp)

TTGACTTGAAAAAACACTACAATTGTAGCCGTATTTTTATTGAGGGCACTATGTCTACTGCAACAAATCTGAATGAACTACAGGAACAAGTTCGCTCCCGCTATAATGGATTAAGTAAAAGGCTACAGCAGGTTGCACATTATCTTTTGGATAATAAAAACAGTGTAGCATTTGATACAATCGCGATCCTTGCAGATAAAGCAAATGTTCCTCCATCAACATTAATCCGTTTTGCCAATGCATTTCATTTCAAAGGATTTAATGAAATGAAACTTTTATTTCAACGTCATTTAATGGGTGAAATGGATAATGAAAAATTAACCTATAAGCAGCAATACAAAAAGGAACCACCAAACTTAAATGAGCCAGATTATATTCTGCAAGAGTTTGCACAAGCCAATAGCCACGCTTTGCAACAGTTAGCTCATCAAACCCATAAGGATATGTTAAATAAAACTATACAACTACTTGAGTATGCAGAAACTATCTATATAGGTGGTTTTCACCATTCTTTTAGTGCTGCGAGCTATTTTTTTCACGCGCTTTCTCATATCCCTTGTGAAACCGTCTTTGTTAATTGCCTAGGGGGAATGTATAAAGAACAACTTAGGAATATTACACATAGAGATGTGCTGTTTGGCATCCATTTCCACCCTTATTCAGAAGAAATGCAAAAAATGTGTGAGATTGCAGCTTATAAAGAGGCTAAACAAATTATTGTAACAGATAGCCCCATAAGCCCATTAGCAAGTCTAAGTGATGTTTGTTTAACTGTAAAAGAAGCACAAATAAAAATGTTTCGTTCTCAAACCTCAACATTATGTTTACTACAAGCACTTTCAGTTGCATTCGCTTTTAGAAAAAAGAGCCATTAACATATTATTTAAAACTGCATCTTATATAAGGTGCGGTTTTATTAAAAATA