Homologs in group_1926

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14330 FBDBKF_14330 69.4 Morganella morganii S1 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
EHELCC_07950 EHELCC_07950 69.4 Morganella morganii S2 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
NLDBIP_08275 NLDBIP_08275 69.4 Morganella morganii S4 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
LHKJJB_05990 LHKJJB_05990 69.4 Morganella morganii S3 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
HKOGLL_04925 HKOGLL_04925 69.4 Morganella morganii S5 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
F4V73_RS02575 F4V73_RS02575 68.3 Morganella psychrotolerans - elongation factor P hydroxylase

Distribution of the homologs in the orthogroup group_1926

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1926

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76938 1.95e-91 267 69 1 178 1 epmC Elongation factor P hydroxylase Escherichia coli (strain K12)
P44255 1.4e-56 179 51 2 164 3 epmC Elongation factor P hydroxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08825
Feature type CDS
Gene -
Product elongation factor P hydroxylase
Location 1930387 - 1930941 (strand: -1)
Length 555 (nucleotides) / 184 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1926
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04315 Elongation factor P hydroxylase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3101 Translation, ribosomal structure and biogenesis (J) J Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09906 elongation factor P hydroxylase [EC:1.14.-.-] - -

Protein Sequence

MSAHHYQQLIDIFNQCFSDSYQTRLVKGDNEPIYLPKSEEIPYHQIIFAHGFYASALHEISHWCIAGDARRQQVDYGYWYCPDGRDQVTQEQFERVEIKPQALDWLFCQAANYPFNVSCDNLDGDFEPDRYQFRNKVREQVLAYLRDKNIPPRAQLFINALHLFYNTPELTPEQFPYQENPLVN

Flanking regions ( +/- flanking 50bp)

TATTGCACTTTGGTTTTCTGCACTTTTTAATTAGGAAAGATAATTTTTAAATGTCAGCACATCATTATCAGCAGTTAATTGATATTTTTAATCAATGTTTTAGCGATAGTTACCAAACACGTTTAGTTAAAGGTGATAACGAGCCAATTTATTTGCCTAAGAGTGAAGAGATACCTTATCACCAAATCATTTTCGCACATGGATTTTACGCGAGTGCATTACATGAAATATCGCATTGGTGTATTGCTGGGGACGCGCGTCGTCAGCAGGTTGATTATGGTTATTGGTATTGTCCTGATGGGCGAGATCAAGTGACTCAAGAGCAGTTTGAACGAGTTGAAATCAAGCCTCAAGCTCTTGACTGGTTATTCTGCCAAGCAGCCAATTATCCATTTAACGTGAGTTGCGATAATTTAGACGGGGATTTTGAGCCAGACCGTTACCAGTTTAGAAACAAGGTGAGAGAGCAAGTATTAGCTTATTTGCGCGATAAAAATATCCCGCCACGTGCACAGCTATTTATTAATGCGTTACATTTGTTTTACAATACACCTGAGTTAACGCCGGAGCAATTTCCTTATCAGGAAAATCCCCTCGTTAATTAAGGATGACGAGATAAACTATCCTCGTCTATCCACTGCGCAGGTTTTAGTAA