Homologs in group_1964

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14330 FBDBKF_14330 89.1 Morganella morganii S1 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
EHELCC_07950 EHELCC_07950 89.1 Morganella morganii S2 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
NLDBIP_08275 NLDBIP_08275 89.1 Morganella morganii S4 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
LHKJJB_05990 LHKJJB_05990 89.1 Morganella morganii S3 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
HKOGLL_04925 HKOGLL_04925 89.1 Morganella morganii S5 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
PMI_RS08825 PMI_RS08825 68.3 Proteus mirabilis HI4320 - elongation factor P hydroxylase

Distribution of the homologs in the orthogroup group_1964

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1964

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76938 2.88e-101 292 75 1 178 1 epmC Elongation factor P hydroxylase Escherichia coli (strain K12)
P44255 1e-55 176 52 2 165 3 epmC Elongation factor P hydroxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02575
Feature type CDS
Gene -
Product elongation factor P hydroxylase
Location 543745 - 544296 (strand: 1)
Length 552 (nucleotides) / 183 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1964
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04315 Elongation factor P hydroxylase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3101 Translation, ribosomal structure and biogenesis (J) J Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09906 elongation factor P hydroxylase [EC:1.14.-.-] - -

Protein Sequence

MSKHHFQQLIDVFDGEFSADFNTRLVKGDEEPIYLPADDDVPYNRIVFAHGFYASGIHEISHWCIAGKERRTQVDFGYWYCPDGRDAKTQSEFEVVEIKPQALDWLFCQAADYPFNVSCDNLDGNFEPDRVKFKRIVHGQVMEYLSQNSLPPRAARFINALQSFYNTPPLTADQFPWPEDPFA

Flanking regions ( +/- flanking 50bp)

TACGTGGCTGTCTCAGCTTTTTCATTAATTTTTAGTGGTTCATATAATCAATGAGTAAACATCATTTTCAGCAATTAATTGACGTCTTTGACGGTGAGTTTTCAGCTGATTTCAATACCCGCCTGGTTAAAGGCGACGAGGAACCTATCTACCTGCCGGCTGACGATGACGTGCCGTATAACCGGATAGTGTTTGCACACGGTTTTTATGCCAGCGGAATTCATGAAATTTCCCACTGGTGCATTGCCGGTAAGGAACGCAGAACACAGGTGGATTTCGGATATTGGTACTGTCCGGACGGGCGCGATGCAAAAACACAATCAGAATTTGAGGTCGTGGAAATAAAACCGCAGGCGCTGGACTGGCTGTTTTGTCAGGCGGCGGATTATCCGTTTAACGTCAGCTGTGACAATCTTGACGGCAATTTCGAGCCTGATCGCGTCAAGTTCAAGCGAATTGTTCACGGGCAGGTGATGGAATATCTTTCACAGAATTCATTACCCCCACGAGCCGCACGGTTTATTAATGCCCTGCAATCGTTTTACAATACGCCACCGCTGACTGCGGACCAATTTCCATGGCCGGAAGATCCGTTTGCCTGACAAACTGATGTTGCGGACGACTGAACTCTAAGGAATAAACATGCTTGCGG