Homologs in group_1926

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14330 FBDBKF_14330 100.0 Morganella morganii S1 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
EHELCC_07950 EHELCC_07950 100.0 Morganella morganii S2 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
NLDBIP_08275 NLDBIP_08275 100.0 Morganella morganii S4 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
LHKJJB_05990 LHKJJB_05990 100.0 Morganella morganii S3 epmC Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
F4V73_RS02575 F4V73_RS02575 89.1 Morganella psychrotolerans - elongation factor P hydroxylase
PMI_RS08825 PMI_RS08825 69.4 Proteus mirabilis HI4320 - elongation factor P hydroxylase

Distribution of the homologs in the orthogroup group_1926

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1926

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76938 1.72e-106 305 82 1 178 1 epmC Elongation factor P hydroxylase Escherichia coli (strain K12)
P44255 2.15e-58 183 54 2 164 3 epmC Elongation factor P hydroxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_04925
Feature type CDS
Gene epmC
Product Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)
Location 34727 - 35278 (strand: 1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession ZDB_682
Length 259781 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1926
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04315 Elongation factor P hydroxylase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3101 Translation, ribosomal structure and biogenesis (J) J Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09906 elongation factor P hydroxylase [EC:1.14.-.-] - -

Protein Sequence

MSTHQYQQLIEIFDNEFFADFNTRLIKGDDEPIYLPADDEAPYNRIVFAHGFYASAIHEISHWCIAGKERRKLVDFGYWYCPDGRDAQTQSEFEVVEIKPQALDWLFCQAAGYPFNVSCDNLDGDFEPDRVKFRRIVHGQVMEYLAQNSIPPRAARFINALQSFYNTPPLTADQFPWPEDPFA

Flanking regions ( +/- flanking 50bp)

TACGTGGCTGTCTCAGCTTTTTTAATTTTCATTAGTGGTTCATATAATCAATGAGTACACATCAATATCAGCAGTTAATTGAAATTTTTGATAACGAATTTTTTGCTGATTTCAATACCCGCCTGATTAAAGGTGACGATGAGCCGATTTATCTGCCTGCAGATGATGAAGCGCCTTATAACCGTATCGTGTTTGCTCACGGCTTTTATGCCAGTGCTATCCATGAAATATCGCACTGGTGCATTGCCGGGAAAGAGCGCAGAAAGCTGGTGGATTTTGGTTACTGGTACTGCCCGGATGGCCGGGATGCACAAACGCAGTCAGAATTTGAGGTTGTCGAAATAAAACCGCAGGCGCTGGACTGGTTATTTTGTCAGGCTGCCGGTTATCCGTTTAACGTCAGTTGTGACAATCTTGACGGCGATTTCGAGCCCGATCGCGTCAAATTCCGGCGTATTGTTCACGGGCAGGTGATGGAGTATCTGGCGCAGAACTCAATACCCCCGCGTGCAGCAAGGTTTATTAATGCCCTGCAATCGTTCTACAATACGCCGCCGCTGACTGCGGACCAATTTCCATGGCCGGAAGATCCGTTTGCCTGACAAACGATTCCGGTGACTGAACTTTAAGGAACAAACATGCTTGCGGATTA