Homologs in group_1838

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13620 FBDBKF_13620 69.7 Morganella morganii S1 perM putative PurR-regulated permease PerM
EHELCC_08475 EHELCC_08475 69.7 Morganella morganii S2 perM putative PurR-regulated permease PerM
NLDBIP_08800 NLDBIP_08800 69.7 Morganella morganii S4 perM putative PurR-regulated permease PerM
LHKJJB_05465 LHKJJB_05465 69.7 Morganella morganii S3 perM putative PurR-regulated permease PerM
HKOGLL_05450 HKOGLL_05450 69.7 Morganella morganii S5 perM putative PurR-regulated permease PerM
F4V73_RS03130 F4V73_RS03130 70.3 Morganella psychrotolerans - AI-2E family transporter

Distribution of the homologs in the orthogroup group_1838

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1838

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFI9 3.06e-175 493 66 1 353 3 perM Putative permease PerM Escherichia coli (strain K12)
P0AFJ0 3.06e-175 493 66 1 353 3 perM Putative permease PerM Escherichia coli O157:H7
P43969 5.59e-128 374 53 1 349 3 perM Putative permease PerM homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O32095 1.74e-29 119 26 8 317 3 yueF Putative transport protein YueF Bacillus subtilis (strain 168)
Q9ZCT3 5.18e-29 118 25 8 333 3 RP630 Putative transport protein RP630 Rickettsia prowazekii (strain Madrid E)
O34472 1.06e-20 95 24 5 309 3 yrrI Putative transport protein YrrI Bacillus subtilis (strain 168)
O32086 6.06e-17 84 26 7 341 3 yubA Putative transport protein YubA Bacillus subtilis (strain 168)
Q55147 7.55e-15 78 23 7 339 3 sll0063 Putative transport protein sll0063 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9X170 7.8e-12 69 23 7 338 3 TM_1349 Putative transport protein TM_1349 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q55153 3.16e-09 61 22 8 335 3 sll0060 Putative transport protein sll0060 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P44646 1.32e-06 53 25 1 141 3 HI_0338 Putative transport protein HI_0338 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O66948 2.48e-06 52 21 9 282 3 aq_740 Putative transport protein aq_740 Aquifex aeolicus (strain VF5)
Q9X0R9 6.81e-06 50 26 1 173 3 TM_1187 Putative transport protein TM_1187 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P0AFS6 1.5e-05 50 24 8 332 3 tqsA AI-2 transport protein TqsA Shigella flexneri
P0AFS5 1.5e-05 50 24 8 332 1 tqsA AI-2 transport protein TqsA Escherichia coli (strain K12)
P0AGM0 8.93e-05 47 22 10 338 1 yhhT Putative transport protein YhhT Escherichia coli (strain K12)
P0AGM1 8.93e-05 47 22 10 338 3 yhhT Putative transport protein YhhT Escherichia coli O157:H7
P9WFM5 0.00018 46 35 2 94 1 Rv0205 Putative transport protein Rv0205 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WFM4 0.00018 46 35 2 94 3 MT0215 Putative transport protein MT0215 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O34991 0.000211 46 26 4 165 3 ytvI Putative transport protein YtvI Bacillus subtilis (strain 168)
P96604 0.000597 45 26 4 123 3 ydbI Putative transport protein YdbI Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07635
Feature type CDS
Gene -
Product AI-2E family transporter
Location 1664392 - 1665480 (strand: -1)
Length 1089 (nucleotides) / 362 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1838
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01594 AI-2E family transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0628 General function prediction only (R) R Predicted PurR-regulated permease PerM

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03548 putative permease - -

Protein Sequence

MLDLLVQWYKRRFADPQVIALVVILIAGFSIIYFFSGILAPLLVAIVLAYLLEWPTHLLEKLGCARIWAVSIVLTLFIGISAIVILILAPTVWQQAMTLISDIPNMINKFNAFARELPERFPALMDVGIVDMMAENLRSKFSTVAESVLKVSLASLIGVITLSIYLILVPLMTFFLLKDKQQMLNAVRRVLPKNRILAAQVWIEVNQQITNYIRGKVTEMVIVGVFTYFVFAFFDLRYSVLLAVLVGVSVLVPYVGAVLATIPVIVIALSQWGLGSDFWALFIAYLVVQGLDSNLLVPILFSEAVNMHPLVIILSVIIFGGMWGFWGVFFAIPLATLIKAVLHALPDEIANEPPLETLEKKK

Flanking regions ( +/- flanking 50bp)

CAATACATATAGATATATTTGACTTATTATTATAAAGGACCTCTATTTTCATGCTGGACTTGCTTGTTCAATGGTATAAACGTCGATTTGCTGATCCCCAAGTTATCGCGCTGGTGGTGATCTTAATTGCCGGTTTTTCAATTATCTACTTTTTCAGTGGCATACTTGCACCATTATTAGTCGCCATTGTATTAGCTTATTTGCTGGAATGGCCAACACACTTACTTGAGAAGTTAGGATGTGCACGAATTTGGGCCGTATCAATCGTTCTGACACTATTTATAGGTATTAGTGCCATTGTTATTTTGATTTTAGCGCCAACGGTATGGCAACAAGCCATGACGCTAATTTCAGATATCCCTAATATGATCAATAAATTCAATGCATTTGCTCGAGAATTACCTGAACGATTCCCCGCATTAATGGATGTTGGCATCGTGGATATGATGGCGGAAAACTTGCGCAGTAAATTTTCAACGGTGGCAGAGTCAGTGTTAAAAGTCTCTTTAGCCTCTTTAATCGGTGTTATCACGCTCTCTATTTATCTGATCCTTGTGCCATTAATGACGTTCTTTTTATTAAAAGATAAGCAACAAATGCTCAATGCTGTCCGTCGGGTATTACCCAAAAATAGAATTCTTGCAGCACAAGTGTGGATTGAGGTTAATCAGCAAATCACCAACTATATTCGTGGTAAGGTTACCGAAATGGTGATTGTTGGTGTATTTACCTATTTTGTCTTTGCTTTTTTTGATTTGCGTTATTCAGTCTTATTAGCGGTTTTAGTTGGCGTTTCGGTTTTAGTGCCTTATGTGGGGGCGGTACTCGCGACTATTCCAGTCATTGTAATTGCACTTTCTCAATGGGGATTAGGCTCTGATTTTTGGGCGCTATTTATCGCTTACTTAGTGGTTCAAGGTTTAGATAGCAACTTATTAGTACCGATATTATTCTCTGAAGCTGTCAATATGCACCCCTTAGTCATTATCTTATCCGTGATTATATTTGGTGGTATGTGGGGCTTTTGGGGGGTGTTTTTCGCCATTCCTTTAGCGACGTTAATCAAAGCAGTATTACATGCGCTGCCTGATGAAATTGCCAATGAGCCACCTTTAGAAACATTAGAAAAGAAAAAGTAATATAGACGCGATTTATCATCAACTTATTGATAATAAAAAAACAGACAGCG