Homologs in group_1875

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_08475 EHELCC_08475 100.0 Morganella morganii S2 perM putative PurR-regulated permease PerM
NLDBIP_08800 NLDBIP_08800 100.0 Morganella morganii S4 perM putative PurR-regulated permease PerM
LHKJJB_05465 LHKJJB_05465 100.0 Morganella morganii S3 perM putative PurR-regulated permease PerM
HKOGLL_05450 HKOGLL_05450 100.0 Morganella morganii S5 perM putative PurR-regulated permease PerM
F4V73_RS03130 F4V73_RS03130 92.5 Morganella psychrotolerans - AI-2E family transporter
PMI_RS07635 PMI_RS07635 69.7 Proteus mirabilis HI4320 - AI-2E family transporter

Distribution of the homologs in the orthogroup group_1875

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1875

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFI9 1.78e-171 484 64 1 353 3 perM Putative permease PerM Escherichia coli (strain K12)
P0AFJ0 1.78e-171 484 64 1 353 3 perM Putative permease PerM Escherichia coli O157:H7
P43969 9.67e-135 390 55 1 349 3 perM Putative permease PerM homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O32095 1.08e-32 128 28 7 316 3 yueF Putative transport protein YueF Bacillus subtilis (strain 168)
Q9ZCT3 2.35e-30 121 27 9 329 3 RP630 Putative transport protein RP630 Rickettsia prowazekii (strain Madrid E)
O34472 6.96e-22 98 24 3 306 3 yrrI Putative transport protein YrrI Bacillus subtilis (strain 168)
O32086 7.86e-16 81 27 4 218 3 yubA Putative transport protein YubA Bacillus subtilis (strain 168)
Q9X170 3.34e-12 70 22 9 350 3 TM_1349 Putative transport protein TM_1349 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q55147 6.28e-11 66 22 6 325 3 sll0063 Putative transport protein sll0063 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q55153 6.45e-08 57 22 10 340 3 sll0060 Putative transport protein sll0060 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O66948 3.14e-07 55 24 7 222 3 aq_740 Putative transport protein aq_740 Aquifex aeolicus (strain VF5)
P44646 3.26e-07 55 22 8 338 3 HI_0338 Putative transport protein HI_0338 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AGM0 3.95e-07 55 24 11 336 1 yhhT Putative transport protein YhhT Escherichia coli (strain K12)
P0AGM1 3.95e-07 55 24 11 336 3 yhhT Putative transport protein YhhT Escherichia coli O157:H7
O34991 3.17e-06 52 22 7 324 3 ytvI Putative transport protein YtvI Bacillus subtilis (strain 168)
P9WFM5 7.07e-06 51 22 7 287 1 Rv0205 Putative transport protein Rv0205 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WFM4 7.07e-06 51 22 7 287 3 MT0215 Putative transport protein MT0215 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q04454 6.53e-05 48 21 6 244 3 BpOF4_00890 Putative transport protein BpOF4_00890 Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
O51039 0.000105 47 24 2 144 3 BB_0006 Putative transport protein BB_0006 Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P0AFS6 0.000124 47 24 7 326 3 tqsA AI-2 transport protein TqsA Shigella flexneri
P0AFS5 0.000124 47 24 7 326 1 tqsA AI-2 transport protein TqsA Escherichia coli (strain K12)
P0AFS8 0.000314 45 29 7 197 3 ydiK Putative transport protein YdiK Shigella flexneri
P0AFS7 0.000314 45 29 7 197 1 ydiK Putative transport protein YdiK Escherichia coli (strain K12)
Q9X0R9 0.000413 45 24 1 173 3 TM_1187 Putative transport protein TM_1187 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_13620
Feature type CDS
Gene perM
Product putative PurR-regulated permease PerM
Location 101765 - 102847 (strand: -1)
Length 1083 (nucleotides) / 360 (amino acids)
In genomic island -

Contig

Accession contig_16
Length 109220 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1875
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01594 AI-2E family transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0628 General function prediction only (R) R Predicted PurR-regulated permease PerM

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03548 putative permease - -

Protein Sequence

MLDLIIQWYRRRFADPQAVALTVILLAGFGIIYFFSGILAPLLVAIVLAYLLEWPIHQMEKRGCSRKLAIMLILTLFIGVSVLVIFILAPTVWGQGRNLLLDMPNMFSRFNEFARELPNRFPALMDVGLMDMILDNARSKLLSVGDSVVKMSLASLVGLLALTIYLILVPLMVFFLLKDKEQLLRGFQRILPRNRSLAGKVWVEMNQQISNYIRGKVTEMIIVGVCTYIVFAVVGLNYALLLGVLVGLSVLIPYVGAVIVTVPVVLVGLFQWGLDSDFWTMFIAYLVVQGLDSNILVPILYSEAVNLHPLVIILSIIIFGGLWGFWGVFFAIPLATLIKAVIHSWPEEVAEDNIQSVSKE

Flanking regions ( +/- flanking 50bp)

CGGTGGGCAGGATTTGTCATATTTTTGCCGCTAATCCCGGGAGCAGAACAATGTTAGATTTGATCATTCAGTGGTACCGACGACGTTTTGCCGATCCGCAGGCAGTTGCTTTGACCGTTATTTTACTGGCGGGTTTCGGAATTATTTATTTTTTCAGCGGTATCTTAGCGCCGCTGCTGGTGGCAATTGTACTGGCGTACCTGCTGGAGTGGCCGATTCATCAGATGGAAAAACGGGGCTGCTCGCGCAAGCTGGCGATTATGCTGATCCTGACGCTGTTTATCGGGGTCAGCGTGCTGGTGATCTTTATCCTCGCGCCGACAGTCTGGGGACAGGGGCGCAATCTGCTGCTGGATATGCCGAATATGTTCAGCCGTTTCAATGAGTTCGCCCGTGAACTGCCGAACCGTTTTCCTGCGCTGATGGATGTCGGGCTGATGGATATGATCCTCGATAATGCCCGCAGCAAGCTGCTCTCAGTCGGGGATTCAGTGGTGAAAATGTCGCTGGCGTCACTGGTGGGATTACTGGCGCTGACCATTTATCTGATTCTGGTGCCGCTGATGGTGTTCTTTTTACTGAAAGATAAAGAACAACTGCTGCGCGGTTTTCAGCGTATTCTGCCGCGTAACCGCTCACTGGCCGGGAAAGTGTGGGTGGAGATGAATCAGCAGATTTCCAACTATATCCGCGGCAAAGTCACCGAGATGATTATTGTCGGTGTTTGTACTTATATCGTCTTCGCGGTGGTCGGCCTGAATTATGCGTTACTGCTGGGTGTGCTGGTGGGGCTGTCAGTCCTTATCCCGTATGTGGGGGCGGTGATTGTGACGGTGCCGGTGGTTCTGGTCGGGCTGTTCCAGTGGGGACTGGATTCGGATTTCTGGACCATGTTTATCGCCTATCTGGTGGTGCAGGGGCTGGACAGCAATATCCTGGTGCCTATTCTCTATTCTGAGGCGGTGAACCTGCATCCGCTGGTGATTATTCTGTCGATCATTATTTTCGGCGGATTATGGGGATTCTGGGGCGTATTCTTTGCTATCCCGTTAGCAACCCTGATTAAAGCAGTGATTCATTCCTGGCCTGAAGAGGTTGCTGAAGATAATATACAATCAGTATCAAAGGAATAATCAAAAAATAAAAAGTGATGTTTTTATAAAACATCACTTTTATATTCATA