COG0628


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0628, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted PurR-regulated permease PerM
Function(s) descr. General function prediction only (R)

Occurence in the database

COG0628 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1037 FBDBKF_05845 173395 174510 1 ydiK AI-2E family transporter YdiK Morganella morganii S1
1 group_1838 FBDBKF_13620 101765 102847 -1 perM putative PurR-regulated permease PerM Morganella morganii S1
2 group_1838 EHELCC_08475 172344 173426 1 perM putative PurR-regulated permease PerM Morganella morganii S2
3 group_1037 EHELCC_11745 6984 8099 -1 ydiK AI-2E family transporter YdiK Morganella morganii S2
4 group_1838 NLDBIP_08800 172344 173426 1 perM putative PurR-regulated permease PerM Morganella morganii S4
5 group_1037 NLDBIP_12085 6939 8054 -1 ydiK AI-2E family transporter YdiK Morganella morganii S4
6 group_1838 LHKJJB_05465 83733 84815 -1 perM putative PurR-regulated permease PerM Morganella morganii S3
7 group_1037 LHKJJB_11945 6984 8099 -1 ydiK AI-2E family transporter YdiK Morganella morganii S3
8 group_1838 HKOGLL_05450 156935 158017 1 perM putative PurR-regulated permease PerM Morganella morganii S5
9 group_1037 HKOGLL_10560 6984 8099 -1 ydiK AI-2E family transporter YdiK Morganella morganii S5
10 group_1838 F4V73_RS03130 669009 670091 1 AI-2E family transporter Morganella psychrotolerans
11 group_1037 F4V73_RS03480 742721 743836 -1 ydiK AI-2E family transporter YdiK Morganella psychrotolerans
12 group_1037 PMI_RS06870 1500625 1501737 1 ydiK AI-2E family transporter YdiK Proteus mirabilis HI4320
13 group_1838 PMI_RS07635 1664392 1665480 -1 AI-2E family transporter Proteus mirabilis HI4320