Homologs in group_270

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05345 FBDBKF_05345 67.2 Morganella morganii S1 hns DNA-binding protein H-NS
EHELCC_12245 EHELCC_12245 67.2 Morganella morganii S2 hns DNA-binding protein H-NS
NLDBIP_12585 NLDBIP_12585 67.2 Morganella morganii S4 hns DNA-binding protein H-NS
LHKJJB_12445 LHKJJB_12445 67.2 Morganella morganii S3 hns DNA-binding protein H-NS
HKOGLL_11060 HKOGLL_11060 67.2 Morganella morganii S5 hns DNA-binding protein H-NS
F4V73_RS05800 F4V73_RS05800 64.9 Morganella psychrotolerans hns histone-like nucleoid-structuring protein H-NS
PMI_RS18630 PMI_RS18630 38.5 Proteus mirabilis HI4320 - H-NS family nucleoid-associated regulatory protein

Distribution of the homologs in the orthogroup group_270

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_270

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P18818 6.44e-91 262 99 0 134 3 hns DNA-binding protein H-NS Proteus vulgaris
P0DOA5 7.73e-72 214 77 1 136 1 hns DNA-binding protein H-NS Yersinia enterocolitica
P0A1S2 3.47e-64 194 80 1 135 1 hns DNA-binding protein H-NS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A0A0H3NBY9 3.47e-64 194 80 1 135 1 hns DNA-binding protein H-NS Salmonella typhimurium (strain SL1344)
P0A1S3 3.47e-64 194 80 1 135 3 hns DNA-binding protein H-NS Salmonella typhi
A0A0F6B244 3.47e-64 194 80 1 135 1 hns DNA-binding protein H-NS Salmonella typhimurium (strain 14028s / SGSC 2262)
Q5PCT5 4.27e-63 192 80 1 135 3 hns DNA-binding protein H-NS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P09120 1.17e-62 191 79 1 135 1 hns DNA-binding protein H-NS Shigella flexneri
P0ACF8 1.17e-62 191 79 1 135 1 hns DNA-binding protein H-NS Escherichia coli (strain K12)
P0ACF9 1.17e-62 191 79 1 135 3 hns DNA-binding protein H-NS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACG0 1.17e-62 191 79 1 135 3 hns DNA-binding protein H-NS Escherichia coli O157:H7
P18955 3.14e-62 189 77 1 135 3 hns DNA-binding protein H-NS Serratia marcescens
P57360 6.1e-48 153 60 1 135 3 hns DNA-binding protein H-NS homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0ACG3 5.25e-41 135 60 3 136 1 stpA DNA-binding protein StpA Shigella flexneri
P0ACG1 5.25e-41 135 60 3 136 1 stpA DNA-binding protein StpA Escherichia coli (strain K12)
P0ACG2 5.25e-41 135 60 3 136 3 stpA DNA-binding protein StpA Escherichia coli O157:H7
Q9L5H8 2.63e-38 129 59 3 136 1 hns DNA-binding protein H-NS, plasmid Salmonella typhi
P0A1S4 5.67e-37 125 55 1 134 3 stpA DNA-binding protein StpA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1S5 5.67e-37 125 55 1 134 3 stpA DNA-binding protein StpA Salmonella typhi
P43841 1.94e-35 122 48 2 135 3 hns DNA-binding protein H-NS homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07205
Feature type CDS
Gene hns
Product histone-like nucleoid-structuring protein H-NS
Location 1578689 - 1579093 (strand: 1)
Length 405 (nucleotides) / 134 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_270
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00816 H-NS histone C-terminal domain
PF22470 H-NS histone-like proteins, N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2916 Transcription (K) K DNA-binding protein H-NS

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03746 DNA-binding protein H-NS - -

Protein Sequence

MSESLKILNNIRTLRAQARETSLETLEEMLEKLEVVVNERREEEQAMQAEIEERQQKLQKYRELLIADGIDPTDLLEAAGASKTGRAKRAARPAKYSYVDDNGETKTWTGQGRTPAVIKRAIEEEGKSLEDFLI

Flanking regions ( +/- flanking 50bp)

TCTATTATTAGTATTACATCAGCCAACAACATTTATTTGAGACCAGGAAAATGAGCGAATCTTTAAAAATATTAAATAACATCCGTACTCTTCGTGCACAGGCAAGAGAAACTTCTTTAGAAACTTTAGAAGAAATGCTTGAGAAACTTGAAGTCGTTGTTAATGAACGCCGCGAAGAAGAACAAGCAATGCAAGCTGAAATTGAAGAACGTCAGCAAAAATTACAAAAATACCGTGAGCTATTAATTGCCGATGGTATTGATCCAACTGACCTGCTTGAAGCTGCTGGCGCAAGCAAAACTGGTCGTGCTAAACGTGCAGCACGTCCTGCTAAATATTCATACGTTGATGATAATGGTGAAACTAAAACTTGGACAGGCCAAGGCCGTACACCAGCTGTAATCAAACGTGCAATTGAAGAAGAAGGCAAATCTTTAGAAGATTTCCTCATCTAATTTAATGCATACTCTATTTAAAATACCCTTTTAAAAATTAAAAGGGTATT