Homologs in group_237

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01785 FBDBKF_01785 64.2 Morganella morganii S1 endA Endonuclease I
EHELCC_02255 EHELCC_02255 64.2 Morganella morganii S2 endA Endonuclease I
NLDBIP_01205 NLDBIP_01205 64.2 Morganella morganii S4 endA Endonuclease I
LHKJJB_00830 LHKJJB_00830 64.2 Morganella morganii S3 endA Endonuclease I
HKOGLL_00870 HKOGLL_00870 64.2 Morganella morganii S5 endA Endonuclease I
F4V73_RS04110 F4V73_RS04110 60.3 Morganella psychrotolerans - endonuclease
PMI_RS12120 PMI_RS12120 51.6 Proteus mirabilis HI4320 - endonuclease

Distribution of the homologs in the orthogroup group_237

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_237

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37994 1.41e-84 257 54 6 235 2 nucM Nuclease NucM Dickeya dadantii (strain 3937)
P25736 3.23e-79 244 60 3 186 1 endA Endonuclease-1 Escherichia coli (strain K12)
P08038 1.37e-70 222 48 5 236 1 dns Extracellular deoxyribonuclease Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q89AD7 2.53e-68 216 44 5 237 3 endA Endonuclease-1 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57487 3.33e-68 216 47 4 209 3 endA Endonuclease-1 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O31222 1.55e-65 209 46 8 239 3 None Extracellular deoxyribonuclease Aeromonas hydrophila
P39658 1.72e-62 201 50 4 194 3 dns Extracellular deoxyribonuclease Aeromonas hydrophila
Q44064 2e-62 201 50 4 194 3 dnsH Periplasmic deoxyribonuclease Aeromonas hydrophila
Q9WVZ1 7.53e-28 111 31 9 242 3 endX Extracellular endonuclease Pseudomonas fluorescens biotype A
O32150 9.27e-07 53 29 5 131 3 bsn Extracellular ribonuclease Bacillus subtilis (strain 168)
Q03091 2.16e-06 52 28 4 128 1 bsn Extracellular ribonuclease Bacillus amyloliquefaciens

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06970
Feature type CDS
Gene -
Product endonuclease
Location 1524779 - 1525756 (strand: -1)
Length 978 (nucleotides) / 325 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_237
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF04231 Endonuclease I

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2356 Replication, recombination and repair (L) L Endonuclease I

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01150 deoxyribonuclease I [EC:3.1.21.1] - -

Protein Sequence

MRKILHYIVLALGLFIITLNVSAQAPENFTKAKQLARERIYYDQNQNNQGTLYCGCHWEWVGKSGGRVNLASCGYQVRAQATRASRIEWEHIVPAWVFGHQRQCWQNGGRANCVKNDPIFGKIEADLHNLAPSIGEVNGDRSNFSFGQLSSQAPYQYGQCRSRVDFASRTFEPRNEVKGQVARVYFYLHDRYNLSMSRQQQQLFMAWDKAYPPTPWERERDNRIANIVGHHNPFVTGQMKWQLGHKNSGAGLTATYRPTTDKIEMPKAPTVSQDEQIKGNLNSKIYHFSHCTGYRTMSDKNAVYFKTENEATKAGYRLANNCKAL

Flanking regions ( +/- flanking 50bp)

TAATAAATCTTATTAGGTTTAATAAAAGAGAGTATAAGGTAGATAGCACTTTGAGAAAAATATTACACTATATTGTTTTAGCGTTAGGTTTATTTATTATTACGCTAAATGTATCCGCACAGGCACCGGAAAATTTCACTAAAGCAAAACAGCTAGCCAGAGAACGCATTTATTATGATCAAAATCAAAACAACCAAGGTACGCTGTATTGTGGTTGTCATTGGGAGTGGGTAGGAAAATCGGGGGGACGTGTTAATTTAGCCAGTTGTGGTTATCAAGTGAGGGCACAAGCCACCCGAGCTTCACGCATTGAATGGGAACATATCGTCCCTGCTTGGGTTTTTGGTCATCAACGTCAATGCTGGCAAAATGGTGGGCGAGCTAACTGTGTTAAAAACGATCCTATTTTTGGCAAAATTGAGGCTGATTTACATAATCTAGCGCCTTCGATTGGAGAGGTGAATGGTGATCGCAGTAATTTTAGCTTTGGTCAATTATCATCTCAAGCGCCTTATCAATATGGCCAGTGTCGCAGTCGGGTCGATTTTGCTTCTCGCACCTTTGAGCCTCGTAATGAGGTGAAAGGCCAAGTTGCACGTGTCTATTTCTACTTACATGATCGTTATAACCTCTCAATGTCACGTCAACAACAACAGCTTTTTATGGCATGGGATAAAGCTTACCCACCAACACCGTGGGAAAGAGAGCGAGATAATCGAATTGCTAACATTGTTGGGCATCATAATCCCTTTGTTACGGGACAAATGAAGTGGCAGTTAGGACATAAAAATAGTGGTGCAGGATTAACTGCAACATATCGTCCTACAACTGACAAAATAGAAATGCCTAAAGCGCCCACAGTCTCCCAAGATGAGCAGATCAAAGGTAATCTAAATAGTAAAATTTATCATTTTTCACACTGTACTGGTTATAGAACCATGTCAGATAAAAATGCGGTATATTTTAAAACCGAAAATGAAGCAACTAAAGCGGGTTACCGATTAGCAAATAACTGTAAAGCGCTTTAGTCTACATCTGTTATATCCAGCGTCGAACGTGGCGGCAATATTGTCGCCAC