Homologs in group_1025

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05770 FBDBKF_05770 75.2 Morganella morganii S1 ribE riboflavin synthase subunit alpha
EHELCC_11820 EHELCC_11820 75.2 Morganella morganii S2 ribE riboflavin synthase subunit alpha
NLDBIP_12160 NLDBIP_12160 75.2 Morganella morganii S4 ribE riboflavin synthase subunit alpha
LHKJJB_12020 LHKJJB_12020 75.2 Morganella morganii S3 ribE riboflavin synthase subunit alpha
HKOGLL_10635 HKOGLL_10635 75.2 Morganella morganii S5 ribE riboflavin synthase subunit alpha
F4V73_RS03555 F4V73_RS03555 75.2 Morganella psychrotolerans - riboflavin synthase

Distribution of the homologs in the orthogroup group_1025

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1025

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFU9 2.55e-109 315 70 0 202 3 ribE Riboflavin synthase Shigella flexneri
P0AFU8 2.55e-109 315 70 0 202 1 ribC Riboflavin synthase Escherichia coli (strain K12)
P45273 1.06e-85 255 59 0 202 3 ribE Riboflavin synthase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8KA22 2.38e-72 221 51 0 206 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57212 1.8e-71 219 52 0 199 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AX1 1.92e-61 194 48 0 199 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9Z820 4.51e-51 167 46 3 203 3 ribE Riboflavin synthase Chlamydia pneumoniae
Q9PJZ1 3.88e-43 146 44 5 202 3 ribE Riboflavin synthase Chlamydia muridarum (strain MoPn / Nigg)
P50854 4.83e-42 144 43 3 186 3 ribE Riboflavin synthase Actinobacillus pleuropneumoniae
O84410 1.73e-40 140 41 5 205 3 ribE Riboflavin synthase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Y7P0 8.92e-37 130 39 2 186 1 rib5 Riboflavin synthase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A5DB51 1.28e-35 128 39 3 195 2 RIB5 Riboflavin synthase Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
P21578 1.51e-35 127 36 2 191 1 luxY Yellow fluorescent protein Aliivibrio fischeri
P51961 7.42e-35 126 39 3 186 1 ribE Riboflavin synthase Photobacterium phosphoreum
P9WK35 1.95e-34 124 41 8 207 1 ribE Riboflavin synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WK34 1.95e-34 124 41 8 207 3 ribE Riboflavin synthase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65328 1.95e-34 124 41 8 207 3 ribE Riboflavin synthase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P16440 7.93e-34 123 38 3 186 1 ribE Riboflavin synthase Bacillus subtilis (strain 168)
P80893 1.07e-33 122 39 5 200 1 Y1-BFP Blue fluorescence protein Aliivibrio fischeri
O67604 5.23e-32 118 33 4 205 3 ribE Riboflavin synthase Aquifex aeolicus (strain VF5)
Q44680 1.54e-29 112 37 2 185 3 ribE Riboflavin synthase Bacillus amyloliquefaciens
P38145 9.26e-29 110 35 2 195 1 RIB5 Riboflavin synthase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q2YN92 3.74e-27 105 35 3 190 1 ribE Riboflavin synthase Brucella abortus (strain 2308)
Q01993 4.95e-26 103 34 1 185 3 ribE Riboflavin synthase Photobacterium leiognathi
P25082 5.53e-22 92 31 2 183 1 luxL Lumazine protein Photobacterium phosphoreum
Q06877 8.36e-17 78 30 2 184 1 lumP Lumazine protein Photobacterium leiognathi

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06775
Feature type CDS
Gene -
Product riboflavin synthase
Location 1479293 - 1479949 (strand: -1)
Length 657 (nucleotides) / 218 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1025
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00677 Lumazine binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0307 Coenzyme transport and metabolism (H) H Riboflavin synthase alpha chain

Kegg Ortholog Annotation(s)

Protein Sequence

MFTGIVQGKGRVIAIEDKGDFRTHIIELPSELVNNLETGASIANNGCCLTVTKIDGNKISFDLVKETLRLTNLGELTVGSEVNIERAAKYGDEIGGHVMSGHIVTTAEIAKIITSENNLQIWFRIFDQTLMKYILHKGFIGIDGISLTIGDVVNNRFCVHLIPETRDRTTLGRKRLGDKVNIELDPQTQAIVDTVERVMAQQALTVKLQATHEEENEK

Flanking regions ( +/- flanking 50bp)

ACACTAAATTAATTAAGATAAACTCGCTTATCAGTCCAAGGAGATGTGAGATGTTTACAGGTATTGTTCAGGGAAAAGGACGTGTTATTGCCATTGAAGATAAAGGTGATTTCCGTACCCATATCATTGAATTACCTTCCGAGTTAGTCAATAACTTAGAAACAGGAGCTTCGATCGCTAACAATGGTTGTTGCCTAACCGTCACAAAAATCGATGGCAATAAAATTAGTTTCGATTTAGTGAAAGAGACGCTGCGCTTAACTAATTTGGGCGAGTTAACGGTTGGTTCAGAAGTTAATATTGAACGAGCGGCCAAATATGGCGATGAAATTGGTGGTCATGTGATGTCTGGTCATATTGTCACTACGGCTGAAATTGCGAAAATTATTACTTCAGAAAATAACTTACAGATCTGGTTTCGTATTTTTGATCAGACATTGATGAAGTATATTTTGCATAAAGGTTTTATTGGCATTGATGGTATTAGTTTAACTATTGGTGATGTGGTTAATAATCGTTTCTGTGTCCATCTGATCCCTGAGACTCGCGATAGAACGACGTTAGGTCGTAAGCGTTTGGGGGATAAAGTTAATATTGAGTTAGATCCACAGACTCAGGCGATTGTTGATACCGTAGAGCGTGTTATGGCGCAACAAGCATTAACGGTTAAGCTTCAAGCAACACACGAAGAAGAAAACGAAAAATAATATAGTCTGTTATCAGACGACTAGAATTAAAAAATCCCGTTTTTCAGTCT