Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K00793
Protein list: lists the 13 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
KO part of 4 pathways
Riboflavin metabolism |
Metabolic pathways |
Biosynthesis of secondary metabolites |
Biosynthesis of cofactors |
KO part of 2 modules
M00125 | Cofactor and vitamin metabolism | Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD |
M00911 | Cofactor and vitamin metabolism | Riboflavin biosynthesis, fungi, GTP => riboflavin/FMN/FAD |
Occurence in the database
K00793 is associated with 13 different proteins |
The 13 proteins are classified into 2 different orthogroup(s) |
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_2739 | FBDBKF_06855 | 36376 | 36654 | 1 | ribC | Riboflavin synthase alpha chain | Morganella morganii S1 |
1 | group_2739 | EHELCC_04115 | 149532 | 149810 | -1 | ribC | Riboflavin synthase alpha chain | Morganella morganii S2 |
2 | group_2739 | NLDBIP_04115 | 149328 | 149606 | -1 | ribC | Riboflavin synthase alpha chain | Morganella morganii S4 |
3 | group_2739 | LHKJJB_09945 | 149442 | 149720 | -1 | ribC | Riboflavin synthase alpha chain | Morganella morganii S3 |
4 | group_2739 | HKOGLL_09030 | 41332 | 41610 | 1 | ribC | Riboflavin synthase alpha chain | Morganella morganii S5 |
5 | group_1093 | FBDBKF_05770 | 157430 | 158095 | -1 | ribE | riboflavin synthase subunit alpha | Morganella morganii S1 |
6 | group_1093 | EHELCC_11820 | 23399 | 24064 | 1 | ribE | riboflavin synthase subunit alpha | Morganella morganii S2 |
7 | group_1093 | NLDBIP_12160 | 23354 | 24019 | 1 | ribE | riboflavin synthase subunit alpha | Morganella morganii S4 |
8 | group_1093 | LHKJJB_12020 | 23399 | 24064 | 1 | ribE | riboflavin synthase subunit alpha | Morganella morganii S3 |
9 | group_1093 | HKOGLL_10635 | 23399 | 24064 | 1 | ribE | riboflavin synthase subunit alpha | Morganella morganii S5 |
10 | group_2739 | F4V73_RS01005 | 215061 | 215339 | 1 | riboflavin synthase | Morganella psychrotolerans | |
11 | group_1093 | F4V73_RS03555 | 759579 | 760238 | 1 | riboflavin synthase | Morganella psychrotolerans | |
12 | group_1093 | PMI_RS06775 | 1479293 | 1479949 | -1 | riboflavin synthase | Proteus mirabilis HI4320 |