COG0307


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0307, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Riboflavin synthase alpha chain
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG0307 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1025 FBDBKF_05770 157430 158095 -1 ribE riboflavin synthase subunit alpha Morganella morganii S1
1 group_2713 FBDBKF_06855 36376 36654 1 ribC Riboflavin synthase alpha chain Morganella morganii S1
2 group_2713 EHELCC_04115 149532 149810 -1 ribC Riboflavin synthase alpha chain Morganella morganii S2
3 group_1025 EHELCC_11820 23399 24064 1 ribE riboflavin synthase subunit alpha Morganella morganii S2
4 group_2713 NLDBIP_04115 149328 149606 -1 ribC Riboflavin synthase alpha chain Morganella morganii S4
5 group_1025 NLDBIP_12160 23354 24019 1 ribE riboflavin synthase subunit alpha Morganella morganii S4
6 group_2713 LHKJJB_09945 149442 149720 -1 ribC Riboflavin synthase alpha chain Morganella morganii S3
7 group_1025 LHKJJB_12020 23399 24064 1 ribE riboflavin synthase subunit alpha Morganella morganii S3
8 group_2713 HKOGLL_09030 41332 41610 1 ribC Riboflavin synthase alpha chain Morganella morganii S5
9 group_1025 HKOGLL_10635 23399 24064 1 ribE riboflavin synthase subunit alpha Morganella morganii S5
10 group_2713 F4V73_RS01005 215061 215339 1 riboflavin synthase Morganella psychrotolerans
11 group_1025 F4V73_RS03555 759579 760238 1 riboflavin synthase Morganella psychrotolerans
12 group_1025 PMI_RS06775 1479293 1479949 -1 riboflavin synthase Proteus mirabilis HI4320