Homologs in group_1002

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05600 FBDBKF_05600 43.6 Morganella morganii S1 pspC envelope stress response membrane protein PspC
EHELCC_11990 EHELCC_11990 43.6 Morganella morganii S2 pspC envelope stress response membrane protein PspC
NLDBIP_12330 NLDBIP_12330 43.6 Morganella morganii S4 pspC envelope stress response membrane protein PspC
LHKJJB_12190 LHKJJB_12190 43.6 Morganella morganii S3 pspC envelope stress response membrane protein PspC
HKOGLL_10805 HKOGLL_10805 43.6 Morganella morganii S5 pspC envelope stress response membrane protein PspC
F4V73_RS03705 F4V73_RS03705 44.4 Morganella psychrotolerans pspC envelope stress response membrane protein PspC

Distribution of the homologs in the orthogroup group_1002

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1002

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFN5 1.71e-36 123 48 1 114 3 pspC Phage shock protein C Shigella flexneri
P0AFN2 1.71e-36 123 48 1 114 1 pspC Phage shock protein C Escherichia coli (strain K12)
P0AFN3 1.71e-36 123 48 1 114 3 pspC Phage shock protein C Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN4 1.71e-36 123 48 1 114 3 pspC Phage shock protein C Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06635
Feature type CDS
Gene pspC
Product envelope stress response membrane protein PspC
Location 1453136 - 1453492 (strand: -1)
Length 357 (nucleotides) / 118 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1002
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04024 PspC domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1983 Transcription (K)
Signal transduction mechanisms (T)		 KT Phage shock protein PspC (stress-responsive transcriptional regulator)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03973 phage shock protein C - -

Protein Sequence

MTMQSKSLYRLPQEGMIRGVCAGLAHYFNIPVLLVRVIAVIALFAGFFGLTIVVYLVLSFFMEPAPDNYNQHQEQQEDLKAILKEVDSQLTKGEKRLQQMERYITSSTYQLNKRFQDL

Flanking regions ( +/- flanking 50bp)

ACATTAGAAGATATTCTTGATGCAGAACATCCTAACTGGAGGCAATCATAATGACGATGCAGAGCAAATCATTGTATCGCTTGCCACAAGAAGGCATGATCCGTGGCGTATGTGCTGGGCTTGCCCATTATTTTAATATTCCTGTGCTATTAGTCAGGGTTATTGCGGTGATTGCACTCTTTGCTGGTTTTTTTGGCTTAACCATTGTTGTTTATCTTGTTTTAAGTTTCTTTATGGAGCCTGCACCTGATAATTATAACCAACATCAGGAACAGCAAGAGGATTTAAAAGCTATTTTAAAAGAAGTGGATAGTCAATTAACAAAAGGTGAAAAACGTTTACAACAAATGGAACGTTATATTACTTCTTCGACTTATCAGCTCAATAAACGCTTTCAAGATTTATAATTTTCTTGCCACTTAATCTAATATGACGCTCCAATACTAGGAGCGTCTTT