COG1983


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1983, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Phage shock protein PspC (stress-responsive transcriptional regulator)
Function(s) descr. Transcription (K)
Signal transduction mechanisms (T)

Occurence in the database

COG1983 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1002 FBDBKF_05600 128448 128801 -1 pspC envelope stress response membrane protein PspC Morganella morganii S1
1 group_1002 EHELCC_11990 52693 53046 1 pspC envelope stress response membrane protein PspC Morganella morganii S2
2 group_1002 NLDBIP_12330 52648 53001 1 pspC envelope stress response membrane protein PspC Morganella morganii S4
3 group_1002 LHKJJB_12190 52693 53046 1 pspC envelope stress response membrane protein PspC Morganella morganii S3
4 group_1002 HKOGLL_10805 52693 53046 1 pspC envelope stress response membrane protein PspC Morganella morganii S5
5 group_1002 F4V73_RS03705 786254 786607 1 pspC envelope stress response membrane protein PspC Morganella psychrotolerans
6 group_1002 PMI_RS06635 1453136 1453492 -1 pspC envelope stress response membrane protein PspC Proteus mirabilis HI4320