Homologs in group_1002

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05600 FBDBKF_05600 83.8 Morganella morganii S1 pspC envelope stress response membrane protein PspC
EHELCC_11990 EHELCC_11990 83.8 Morganella morganii S2 pspC envelope stress response membrane protein PspC
NLDBIP_12330 NLDBIP_12330 83.8 Morganella morganii S4 pspC envelope stress response membrane protein PspC
LHKJJB_12190 LHKJJB_12190 83.8 Morganella morganii S3 pspC envelope stress response membrane protein PspC
HKOGLL_10805 HKOGLL_10805 83.8 Morganella morganii S5 pspC envelope stress response membrane protein PspC
PMI_RS06635 PMI_RS06635 44.4 Proteus mirabilis HI4320 pspC envelope stress response membrane protein PspC

Distribution of the homologs in the orthogroup group_1002

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1002

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFN5 4.22e-32 112 46 0 113 3 pspC Phage shock protein C Shigella flexneri
P0AFN2 4.22e-32 112 46 0 113 1 pspC Phage shock protein C Escherichia coli (strain K12)
P0AFN3 4.22e-32 112 46 0 113 3 pspC Phage shock protein C Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN4 4.22e-32 112 46 0 113 3 pspC Phage shock protein C Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03705
Feature type CDS
Gene pspC
Product envelope stress response membrane protein PspC
Location 786254 - 786607 (strand: 1)
Length 354 (nucleotides) / 117 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1002
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF04024 PspC domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1983 Transcription (K)
Signal transduction mechanisms (T)		 KT Phage shock protein PspC (stress-responsive transcriptional regulator)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03973 phage shock protein C - -

Protein Sequence

MEFQSRKLYRYPDEGMFRGVCAGIANYFDVPVWLIRVIAVVATFTGFFWLTITMYILFGMILPVVPQDHHRDAGGQSAAELLEQVERSQARTEKQIRDIERYVTSERFTLNRRFRDL

Flanking regions ( +/- flanking 50bp)

ACACTGGAAGCGATTCTGGATGCGGAAAATCCGGGCTGGAGGCAATCATAATGGAATTTCAGTCACGTAAACTGTACCGGTATCCGGATGAGGGTATGTTTCGGGGAGTCTGTGCCGGTATTGCTAACTATTTTGATGTACCGGTCTGGCTTATCCGCGTTATCGCGGTTGTCGCCACCTTTACCGGGTTTTTCTGGCTGACTATCACCATGTATATCCTGTTCGGCATGATATTACCGGTTGTCCCGCAGGACCATCACCGCGATGCAGGCGGACAAAGTGCCGCAGAGTTGCTTGAGCAGGTGGAGCGTAGCCAGGCGCGCACCGAAAAGCAGATCCGCGATATTGAGCGTTATGTGACGTCGGAGCGGTTTACGCTTAACCGCCGCTTTCGTGATCTTTAATTATACCCTTATTCATTCAAACTGCAGGTGCGTTGGCTACGCTCAGTTAG