Homologs in group_935

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05080 FBDBKF_05080 77.9 Morganella morganii S1 lapB lipopolysaccharide assembly protein LapB
EHELCC_12510 EHELCC_12510 77.9 Morganella morganii S2 lapB lipopolysaccharide assembly protein LapB
NLDBIP_12850 NLDBIP_12850 77.9 Morganella morganii S4 lapB lipopolysaccharide assembly protein LapB
LHKJJB_12710 LHKJJB_12710 77.9 Morganella morganii S3 lapB lipopolysaccharide assembly protein LapB
HKOGLL_11325 HKOGLL_11325 77.9 Morganella morganii S5 lapB lipopolysaccharide assembly protein LapB
F4V73_RS05535 F4V73_RS05535 77.6 Morganella psychrotolerans lapB lipopolysaccharide assembly protein LapB

Distribution of the homologs in the orthogroup group_935

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_935

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB58 0.0 560 69 0 379 1 lapB Lipopolysaccharide assembly protein B Escherichia coli (strain K12)
P0AB59 0.0 560 69 0 379 1 lapB Lipopolysaccharide assembly protein B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB60 0.0 560 69 0 379 1 lapB Lipopolysaccharide assembly protein B Escherichia coli O157:H7
P44130 1.63e-125 370 47 2 393 3 lapB Lipopolysaccharide assembly protein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9ZD72 2.94e-08 58 27 1 127 4 RP472 Uncharacterized protein RP472 Rickettsia prowazekii (strain Madrid E)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06340
Feature type CDS
Gene lapB
Product lipopolysaccharide assembly protein LapB
Location 1389177 - 1390346 (strand: -1)
Length 1170 (nucleotides) / 389 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_935
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13176 Tetratricopeptide repeat
PF14559 Tetratricopeptide repeat
PF18073 Rubredoxin metal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2956 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19804 lipopolysaccharide assembly protein B - -

Protein Sequence

MLELLFLLLPVAAAYGWYMGRRGAQQDKQQNADRLSREYVAGVNFLLSDQQDKAVDLFLEMLKEDSSAFEAHLTLGNLFRSRGEVERAIRIHQSLMESAALSFEQRLLAIQQLGRDYVAAGVYDRAEHMFLQLIDEQDFRQSALQSLLAIYQLTSDWGKAIETAEKLVKLGQHELKEQIAHFYCELALQEMSSDNLDNALSFLQKAGQMDPLCARVSIMYGRIYIARDEKNKAIDVLMKVIEQDKEMVSETLPMLFECFQSQGDPARWEAYLRQCVESNCGAIAELYLADIIEEKEGIEAAQLYINRQLERHPTMRLFYRLMRYHLAEAEEGRAKESLILLRYMVGEQIRTKPDYRCHKCGFTSHALYWHCPSCRSWDTVKPIRGLDGQ

Flanking regions ( +/- flanking 50bp)

AAGAAAATCGTTCTACAGCCGTTTCTACTGTAAAATAAGGACGAGAATAGATGCTTGAGTTGCTGTTTCTGTTATTACCGGTCGCTGCGGCTTATGGCTGGTATATGGGGCGTCGTGGTGCGCAACAGGATAAACAGCAAAATGCCGATCGCCTGTCACGTGAATATGTGGCAGGGGTTAACTTTTTACTTTCTGATCAACAAGACAAAGCGGTTGATCTGTTCCTTGAAATGCTTAAAGAGGATAGCTCAGCCTTTGAAGCACATCTTACTTTAGGTAATCTATTTCGCTCTCGTGGTGAAGTTGAACGTGCGATTCGTATTCACCAATCGTTAATGGAGAGCGCGGCACTCTCTTTTGAACAACGTCTTCTCGCTATTCAGCAACTTGGCCGTGATTATGTCGCAGCAGGGGTTTATGATCGCGCTGAACATATGTTTTTACAGCTGATTGATGAGCAGGATTTTCGTCAAAGTGCATTACAATCCCTCCTAGCCATTTATCAACTTACCAGTGACTGGGGTAAGGCGATAGAAACCGCAGAGAAATTGGTAAAACTGGGTCAACATGAACTTAAAGAGCAAATTGCCCATTTCTATTGTGAACTCGCATTGCAAGAAATGAGCAGTGATAATCTTGATAATGCGCTAAGTTTTCTACAAAAAGCCGGGCAAATGGATCCACTTTGTGCCCGTGTTTCCATTATGTATGGTCGTATCTATATCGCGCGCGATGAAAAAAATAAAGCCATTGATGTATTAATGAAAGTAATTGAGCAAGATAAAGAGATGGTCAGTGAAACCTTGCCAATGCTTTTTGAATGCTTCCAATCTCAAGGTGATCCTGCACGTTGGGAAGCCTATCTACGTCAATGTGTCGAGAGTAATTGTGGTGCCATTGCAGAGCTTTATCTTGCCGATATTATTGAAGAGAAAGAGGGCATTGAAGCTGCACAGTTATATATTAATCGCCAACTAGAACGTCATCCTACCATGCGACTTTTCTATCGTTTAATGCGCTATCATTTAGCTGAAGCAGAAGAAGGACGCGCAAAAGAGAGCCTGATCTTATTACGTTATATGGTCGGTGAGCAGATCCGCACAAAACCTGATTACCGTTGCCATAAATGTGGTTTTACCTCCCATGCATTATATTGGCATTGTCCATCCTGTCGCTCTTGGGATACCGTTAAGCCGATACGTGGCTTAGATGGTCAGTGACGATGTCACTTTTAATAGTCTCTTGATAAATAAAGGCCTTAAAATGTCAT