Homologs in group_2092

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15745 FBDBKF_15745 36.8 Morganella morganii S1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
EHELCC_17660 EHELCC_17660 36.8 Morganella morganii S2 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
NLDBIP_19330 NLDBIP_19330 36.8 Morganella morganii S4 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
LHKJJB_18100 LHKJJB_18100 36.8 Morganella morganii S3 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
HKOGLL_18980 HKOGLL_18980 36.8 Morganella morganii S5 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
F4V73_RS07945 F4V73_RS07945 37.1 Morganella psychrotolerans tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB

Distribution of the homologs in the orthogroup group_2092

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2092

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O59791 7.09e-163 459 70 0 321 1 sry1 Serine racemase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P36007 1.06e-154 439 67 0 320 1 SRY1 L-threo-3-hydroxyaspartate ammonia-lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A4F2N8 2.12e-141 405 61 0 317 1 thadh L-threo-3-hydroxyaspartate ammonia-lyase Pseudomonas sp.
Q54HH2 9.26e-96 289 44 3 325 1 srr Serine racemase Dictyostelium discoideum
A1B8Z2 2.04e-94 285 44 1 308 1 bhcB beta-hydroxyaspartate dehydratase Paracoccus denitrificans (strain Pd 1222)
Q7XSN8 5.79e-88 270 44 2 305 1 SERR Serine racemase Oryza sativa subsp. japonica
A2XWA9 5.79e-88 270 44 2 305 3 OsI_16936 Serine racemase Oryza sativa subsp. indica
Q2PGG3 5.7e-85 262 44 3 316 1 SR Serine racemase Arabidopsis thaliana
A0JNI4 1.28e-77 243 40 6 315 2 SRR Serine racemase Bos taurus
Q9GZT4 2.63e-77 243 39 5 322 1 SRR Serine racemase Homo sapiens
Q8NWQ4 2.76e-68 219 40 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MW2)
Q6G9C4 2.76e-68 219 40 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MSSA476)
Q6GGX0 2.76e-68 219 40 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MRSA252)
Q5HFY5 2.76e-68 219 40 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain COL)
Q2FYJ3 2.76e-68 219 40 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH01 2.76e-68 219 40 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain USA300)
Q9QZX7 3.23e-68 219 40 5 313 1 Srr Serine racemase Mus musculus
Q2YY67 4.31e-67 216 39 3 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q76EQ0 4.63e-67 216 40 5 313 1 Srr Serine racemase Rattus norvegicus
Q7A5L8 5.12e-67 216 39 2 309 1 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain N315)
Q99U50 5.12e-67 216 39 2 309 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q9WYJ1 2.34e-61 203 36 1 315 1 TM_0356 L-threonine ammonia-lyase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9AXU4 1.56e-60 206 35 1 289 1 TD Threonine dehydratase Nicotiana attenuata
P0AGF9 7e-59 195 36 1 305 3 tdcB L-threonine dehydratase catabolic TdcB Shigella flexneri
P0AGF6 7e-59 195 36 1 305 1 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli (strain K12)
P0AGF7 7e-59 195 36 1 305 3 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGF8 7e-59 195 36 1 305 3 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli O157:H7
Q74FW6 8.38e-58 194 39 3 307 1 tdcB L-threonine ammonia-lyase Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
P11954 1.16e-56 189 36 1 305 1 tdcB L-threonine dehydratase catabolic TdcB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55664 1.59e-56 189 34 1 315 3 NGR_a01490 Putative threonine dehydratase Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9CKJ2 2.05e-55 191 35 1 289 3 ilvA L-threonine dehydratase biosynthetic IlvA Pasteurella multocida (strain Pm70)
P46493 2.69e-55 190 35 1 304 3 ilvA L-threonine dehydratase biosynthetic IlvA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q10725 4.16e-55 185 32 4 325 1 psdht Phenylserine dehydratase Ralstonia pickettii
Q8CNK9 4.56e-52 180 32 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HMF5 4.56e-52 180 32 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P25306 5.92e-50 178 32 2 311 1 TD2 Threonine dehydratase 2 biosynthetic, chloroplastic Solanum lycopersicum
P00927 8.22e-50 177 36 4 299 1 ILV1 Threonine dehydratase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P20506 1e-49 176 35 4 304 3 ilvA L-Threonine dehydratase biosynthetic IlvA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P04968 2.56e-49 174 35 4 304 1 ilvA L-threonine dehydratase biosynthetic IlvA Escherichia coli (strain K12)
P37946 9.84e-49 171 33 2 306 3 ilvA L-threonine dehydratase biosynthetic IlvA Bacillus subtilis (strain 168)
O42615 1.58e-48 173 35 5 314 3 ILV1 Threonine dehydratase, mitochondrial Blastobotrys adeninivorans
Q9ZSS6 5.34e-48 172 37 2 291 1 OMR1 Threonine dehydratase biosynthetic, chloroplastic Arabidopsis thaliana
O94634 5.76e-48 172 33 2 296 3 SPBC1677.03c Threonine dehydratase, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q4L7U4 5.19e-46 164 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus haemolyticus (strain JCSC1435)
Q3V7T5 6.82e-46 164 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MRSA252)
Q5HEE0 8.33e-46 163 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain COL)
Q2FWJ9 8.33e-46 163 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FF63 8.33e-46 163 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain USA300)
Q8NVI8 1.45e-45 162 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MW2)
Q3V7T4 1.45e-45 162 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MSSA476)
Q9KC63 1.54e-45 162 31 2 307 3 ilvA L-threonine dehydratase biosynthetic IlvA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q2YUE8 4.7e-45 161 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A4H2 1.55e-44 160 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain N315)
Q99SJ1 1.55e-44 160 33 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q02145 5.15e-44 158 34 5 312 3 ilvA L-threonine dehydratase biosynthetic IlvA Lactococcus lactis subsp. lactis (strain IL1403)
A0FKE6 2.46e-43 160 34 2 291 1 TD1 Threonine dehydratase 1 biosynthetic, chloroplastic Solanum lycopersicum
Q39469 1.57e-42 157 30 2 311 2 None Threonine dehydratase biosynthetic, chloroplastic Cicer arietinum
Q49Z16 3.56e-42 154 32 3 311 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q04513 8.19e-42 153 32 5 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P53607 1.88e-40 150 31 3 302 3 ilvA L-threonine dehydratase biosynthetic IlvA Burkholderia multivorans (strain ATCC 17616 / 249)
Q9X7F1 7.46e-40 147 34 6 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium leprae (strain TN)
V5Y0V0 9.07e-39 144 30 3 312 3 AKTS1-1 Threonine dehydratase-like protein AKTS1-1 Alternaria alternata
P9WG95 4.04e-36 137 32 6 319 1 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG94 4.04e-36 137 32 6 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66898 4.04e-36 137 32 6 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q8R238 6.78e-21 94 26 4 276 1 Sdsl Serine dehydratase-like Mus musculus
Q96GA7 9.13e-19 88 34 2 158 1 SDSL Serine dehydratase-like Homo sapiens
A0A6N3IN21 1.1e-18 88 25 3 277 1 Sdsl Serine dehydratase-like Rattus norvegicus
C8ZAU6 1.12e-17 85 23 5 288 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse)
B3LU13 1.12e-17 85 23 5 288 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain RM11-1a)
P31212 1.32e-17 85 31 1 166 2 TD Threonine dehydratase biosynthetic, chloroplastic (Fragment) Solanum tuberosum
B5VKE8 1.87e-17 85 23 7 328 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain AWRI1631)
Q86B06 2.22e-17 85 24 11 318 3 sds L-serine dehydratase Dictyostelium discoideum
P0CF23 3.69e-17 84 22 5 288 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae
A6ZVB1 5.13e-17 84 22 5 288 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain YJM789)
Q8VBT2 8.45e-17 83 24 4 270 1 Sds L-serine dehydratase/L-threonine deaminase Mus musculus
Q9K7E3 1.76e-16 82 24 10 324 3 thrC Threonine synthase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P25379 2.96e-16 82 24 7 313 1 CHA1 Catabolic L-serine/threonine dehydratase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P09123 7.13e-15 77 26 9 295 3 thrC Threonine synthase Bacillus sp. (strain ULM1)
P04990 1.49e-14 77 23 11 327 3 thrC Threonine synthase Bacillus subtilis (strain 168)
A0R220 2.63e-14 76 24 7 297 1 thrC Threonine synthase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P20132 4.24e-14 75 24 5 284 1 SDS L-serine dehydratase/L-threonine deaminase Homo sapiens
Q0VCW4 2.37e-13 73 23 6 310 2 SDS L-serine dehydratase/L-threonine deaminase Bos taurus
P9WG59 1.83e-11 67 22 7 297 1 thrC Threonine synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG58 1.83e-11 67 22 7 297 3 thrC Threonine synthase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66903 1.83e-11 67 22 7 297 3 thrC Threonine synthase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P45837 8.78e-11 65 23 7 296 3 thrC Threonine synthase Mycobacterium leprae (strain TN)
Q58H57 7.64e-10 63 23 13 343 2 CBS Cystathionine beta-synthase Macaca fascicularis
P09367 8.36e-10 62 20 6 305 1 Sds L-serine dehydratase/L-threonine deaminase Rattus norvegicus
P35520 2.71e-09 61 26 7 203 1 CBS Cystathionine beta-synthase Homo sapiens
Q91WT9 4.83e-09 60 25 9 219 1 Cbs Cystathionine beta-synthase Mus musculus
Q9N0V7 5.53e-09 60 27 8 203 2 CBS Cystathionine beta-synthase Oryctolagus cuniculus
P32232 4.5e-08 57 25 9 219 1 Cbs Cystathionine beta-synthase Rattus norvegicus
B3PYT5 7.81e-08 57 25 8 227 3 dsdA Probable D-serine dehydratase Rhizobium etli (strain CIAT 652)
B5ZNC1 7.85e-08 57 25 8 227 3 dsdA Probable D-serine dehydratase Rhizobium leguminosarum bv. trifolii (strain WSM2304)
P66899 2.57e-07 55 24 13 316 1 ygeX Diaminopropionate ammonia-lyase Escherichia coli (strain K12)
P66900 2.57e-07 55 24 13 316 3 ygeX Diaminopropionate ammonia-lyase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P66901 2.57e-07 55 24 13 316 3 ygeX Diaminopropionate ammonia-lyase Escherichia coli O157:H7
Q59447 3.06e-07 54 25 7 202 3 cysK Cysteine synthase Flavobacterium sp. (strain K3-15 / DSM ID92-509)
Q58860 3.44e-07 55 23 9 309 3 thrC Threonine synthase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8TQD4 4.23e-07 54 22 10 311 1 thrC Threonine synthase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P0CF22 1.36e-06 52 24 2 149 5 SDL1 Putative truncated L-serine dehydratase SDL1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P74193 2.13e-06 52 22 9 318 3 thrC Threonine synthase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A6UB95 7.32e-06 50 21 7 247 3 dsdA Probable D-serine dehydratase Sinorhizobium medicae (strain WSM419)
Q3AFZ5 9.64e-06 50 24 9 292 3 dsdA Probable D-serine dehydratase Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Q5XAQ3 1.71e-05 49 26 4 200 1 cysK Cysteine synthase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P71128 1.95e-05 49 22 11 305 3 cysM Cysteine synthase B Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P40817 2.21e-05 49 23 7 220 1 dpaL Diaminopropionate ammonia-lyase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9I526 3.47e-05 48 23 6 199 3 cysM Cysteine synthase B Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P16703 3.9e-05 48 22 5 197 1 cysM Cysteine synthase B Escherichia coli (strain K12)
O45679 4.62e-05 48 26 5 200 1 cysl-2 Bifunctional L-3-cyanoalanine synthase/cysteine synthase Caenorhabditis elegans
P0CF21 5.73e-05 45 26 2 123 5 YIL168W Putative truncated L-serine dehydratase YIL168W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O05393 0.000364 45 23 11 279 1 mccA O-acetylserine dependent cystathionine beta-synthase Bacillus subtilis (strain 168)
O34476 0.00041 45 28 2 109 3 ytkP Probable cysteine synthase Bacillus subtilis (strain 168)
Q8CMT6 0.000512 45 24 5 200 3 cysK Cysteine synthase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRP1 0.000512 45 24 5 200 3 cysK Cysteine synthase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P46794 0.000514 45 26 7 201 2 cysB Cystathionine beta-synthase Dictyostelium discoideum
Q2SHX7 0.00074 44 25 7 235 3 dsdA Probable D-serine dehydratase Hahella chejuensis (strain KCTC 2396)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05955
Feature type CDS
Gene -
Product threo-3-hydroxy-L-aspartate ammonia-lyase
Location 1307395 - 1308366 (strand: -1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2092
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00291 Pyridoxal-phosphate dependent enzyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1171 Amino acid transport and metabolism (E) E Threonine deaminase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22589 threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] - -

Protein Sequence

MNKLALPTYPDVVEAHQRILPYLNKTPILTSRTINELTGAQFYFKCENFQRIGAFKFRGAMNALSQFTGEQRKNGVITFSSGNHAQAIALSAKLLGIPATIIMPEDAPTAKMQATKGYGGRVILYNRYTQDREEIGQKLAQEEGLTLIPPYDHPHVIAGQGTAAKELFEEVGELDMLFVPLGGGGLLSGSLLSTKALSPHCRIFGVEPLAGNDGQQSLRKGEIIYIDTPKTIADGAQTQHLGDYTFEIIRNNVDDILTATDEELISAMQFYAQRMKIIVEPTGCLSLAAARQFGDKLKGKKIGIIISGGNVDIMQYGHFLSQK

Flanking regions ( +/- flanking 50bp)

TTTGGCAGTAAAATTGAAATTGAAGCCATGGTGATCAAGGAGCAAACTTTATGAATAAATTAGCGCTTCCTACTTACCCAGATGTGGTTGAAGCACATCAACGTATTTTGCCATATCTTAATAAAACACCTATCTTAACCTCTCGCACTATTAATGAGTTAACGGGTGCTCAATTCTATTTTAAATGCGAAAACTTTCAGCGCATAGGCGCTTTTAAATTTCGCGGAGCAATGAATGCATTATCACAATTTACGGGCGAACAACGCAAAAATGGTGTGATAACTTTTTCATCAGGTAATCATGCTCAAGCTATTGCACTATCGGCAAAATTATTAGGTATTCCAGCTACAATTATCATGCCTGAAGATGCCCCCACCGCTAAGATGCAAGCAACAAAAGGTTATGGTGGTAGAGTCATTCTATATAACCGTTATACACAAGATCGCGAAGAGATAGGACAAAAACTTGCTCAAGAAGAAGGATTAACTTTAATACCACCTTACGATCATCCTCACGTTATTGCCGGTCAAGGTACTGCAGCTAAAGAGTTATTCGAGGAAGTTGGTGAGTTAGATATGCTGTTTGTTCCCTTAGGGGGAGGTGGTTTACTTTCAGGTTCATTATTATCAACCAAAGCCCTTTCGCCACATTGTAGAATTTTTGGTGTTGAGCCTTTAGCGGGAAATGACGGACAACAATCATTACGCAAAGGTGAGATAATTTATATTGATACGCCAAAAACTATTGCAGATGGCGCACAAACTCAGCATTTAGGCGATTATACTTTTGAGATCATTCGCAACAACGTAGACGATATTTTAACAGCAACAGATGAAGAACTAATTTCTGCTATGCAATTTTATGCTCAGAGAATGAAAATCATTGTAGAGCCTACAGGCTGTTTAAGTTTAGCTGCAGCTCGTCAATTTGGTGATAAGTTAAAAGGCAAAAAAATTGGCATTATTATCAGTGGTGGCAATGTCGATATTATGCAATATGGTCATTTTTTATCACAAAAATAATTGAATAAATAGATGTTATTTATTATAAAAAAGCAGTATAGCTTGTTTTT