Homologs in group_615

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01945 FBDBKF_01945 77.3 Morganella morganii S1 yhcC TIGR01212 family radical SAM protein
EHELCC_02415 EHELCC_02415 77.3 Morganella morganii S2 yhcC TIGR01212 family radical SAM protein
NLDBIP_01045 NLDBIP_01045 77.3 Morganella morganii S4 yhcC TIGR01212 family radical SAM protein
LHKJJB_00990 LHKJJB_00990 77.3 Morganella morganii S3 yhcC TIGR01212 family radical SAM protein
HKOGLL_01030 HKOGLL_01030 77.3 Morganella morganii S5 yhcC TIGR01212 family radical SAM protein
F4V73_RS04290 F4V73_RS04290 73.5 Morganella psychrotolerans - TIGR01212 family radical SAM protein

Distribution of the homologs in the orthogroup group_615

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_615

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADW6 6.31e-163 458 70 0 305 3 yhcC Protein YhcC Escherichia coli (strain K12)
P0ADW7 6.31e-163 458 70 0 305 3 yhcC Uncharacterized protein YhcC Escherichia coli O157:H7
O35008 3.9e-73 231 39 4 289 3 ytqA Uncharacterized protein YtqA Bacillus subtilis (strain 168)
Q57910 9.36e-45 157 30 5 274 3 MJ0486 Uncharacterized protein MJ0486 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9VQZ6 2.76e-12 70 25 3 155 1 Elp3 Elongator complex protein 3 Drosophila melanogaster
Q9CZX0 4.38e-12 70 27 3 155 1 Elp3 Elongator complex protein 3 Mus musculus
Q9H9T3 6.39e-12 69 26 3 155 1 ELP3 Elongator complex protein 3 Homo sapiens
Q02908 9.31e-12 68 26 3 155 1 ELP3 Elongator complex protein 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q2KJ61 9.65e-12 68 25 3 155 2 ELP3 Elongator complex protein 3 Bos taurus
O14023 1.01e-11 68 27 3 155 3 elp3 Elongator complex protein 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q23651 1.26e-11 68 27 3 155 3 elpc-3 Elongator complex protein 3 Caenorhabditis elegans
Q58536 1.27e-11 68 27 4 155 3 MJ1136 tRNA uridine(34) acetyltransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q60LW7 1.33e-11 68 27 3 155 3 elpc-3 Elongator complex protein 3 Caenorhabditis briggsae
Q5RIC0 2.82e-11 67 27 3 155 2 elp3 Elongator complex protein 3 Danio rerio
Q93ZR1 3.6e-11 67 26 3 155 1 HAG3 Elongator complex protein 3 Arabidopsis thaliana
Q6NVL5 3.88e-11 67 26 3 155 2 elp3 Elongator complex protein 3 Xenopus tropicalis
D5VRB9 1.19e-10 65 24 6 207 1 Metin_0452 tRNA uridine(34) acetyltransferase Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)
Q5ZHS1 1.21e-10 65 26 3 155 2 ELP3 Elongator complex protein 3 Gallus gallus
Q5HZM6 1.37e-10 65 25 3 155 1 elp3 Elongator complex protein 3 Xenopus laevis
A0A1C7D1B7 3.42e-10 63 28 3 173 1 cbdbA595 tRNA uridine(34) acetyltransferase Dehalococcoides mccartyi (strain CBDB1)
Q7X7L3 9.3e-10 62 25 3 155 2 ELP3 Elongator complex protein 3 Oryza sativa subsp. japonica
Q1ZXC6 1.05e-09 62 24 4 161 3 elp3 Elongator complex protein 3 Dictyostelium discoideum
A1WVF7 4.18e-05 48 37 1 72 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Halorhodospira halophila (strain DSM 244 / SL1)
Q58275 0.000177 46 23 6 176 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58882 0.000287 45 21 5 179 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05285
Feature type CDS
Gene -
Product TIGR01212 family radical SAM protein
Location 1154189 - 1155118 (strand: 1)
Length 930 (nucleotides) / 309 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_615
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF16199 Radical_SAM C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1242 General function prediction only (R) R Radical SAM superfamily enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07139 uncharacterized protein - -

Protein Sequence

MQLHTVVNMFGADLQRRYHEKIHKITLHGGFSCPNRDGTLGRGGCTFCNVSSFADEQTQYHSIEEQIAYQAKHITRARRYLAYFQAYTSTYAEVEHLRKMYESALLQANMVGLCVGTRPDCVPVSVLDLLQGYCEQGYEVWLELGLQTAHNKTLKHINRGHDFQCYQATTKEARRRGLKVCTHLIIGLPREDHQLNMQTLEQVVETGVDGLKLHPLHIVEGSTIAKAWKAGRISALTQQQYVYTAGEIIRHTPAEVIYHRVCASARKPTLLAPEWCENHWLGMNALYQYLLEKGVQGSGINKPFVANCK

Flanking regions ( +/- flanking 50bp)

CTCTCTGGTAAAAAGCTTCCCTGAGTTAGATACCAGTAAATAAACTTGTTATGCAACTACACACTGTAGTGAATATGTTCGGCGCTGATCTCCAGCGCCGTTATCATGAAAAAATCCACAAAATAACCCTTCATGGTGGTTTTAGTTGTCCTAATCGAGATGGCACATTAGGACGAGGAGGGTGTACATTTTGCAATGTCTCTTCTTTTGCTGATGAGCAAACGCAATATCACTCTATTGAAGAGCAAATCGCCTACCAAGCTAAGCATATTACCCGTGCTCGCCGTTATTTAGCTTATTTTCAAGCCTATACTAGTACCTATGCAGAAGTAGAACATCTACGAAAAATGTATGAAAGTGCATTATTACAAGCCAATATGGTTGGATTATGTGTTGGGACACGCCCTGATTGTGTGCCCGTCAGTGTGTTAGATCTACTGCAAGGCTATTGCGAACAAGGTTATGAAGTATGGTTAGAGTTAGGATTACAAACTGCACATAATAAGACATTAAAGCATATTAATCGTGGTCATGATTTTCAATGTTATCAAGCAACCACAAAAGAAGCGCGTCGCCGAGGTTTAAAGGTGTGTACGCATCTTATTATCGGTTTACCTCGTGAAGATCATCAGTTAAATATGCAAACCTTAGAGCAGGTAGTAGAAACCGGTGTTGATGGACTAAAATTACACCCTTTACACATAGTTGAGGGGAGTACGATAGCCAAAGCATGGAAAGCAGGGCGTATTAGTGCATTAACACAACAACAATATGTTTATACTGCTGGTGAAATAATCCGTCATACTCCTGCAGAAGTTATTTATCATCGTGTTTGTGCCAGTGCCAGAAAACCTACTTTATTAGCCCCTGAATGGTGTGAAAATCACTGGTTGGGTATGAATGCACTCTATCAATACTTATTAGAAAAAGGCGTACAAGGTAGTGGGATAAATAAGCCTTTTGTGGCTAATTGTAAATAATTATCCACTCAACATAAAATCACTTGTCACTTTTTTAATCATACTGTACG