Homologs in group_615

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01945 FBDBKF_01945 90.3 Morganella morganii S1 yhcC TIGR01212 family radical SAM protein
EHELCC_02415 EHELCC_02415 90.3 Morganella morganii S2 yhcC TIGR01212 family radical SAM protein
NLDBIP_01045 NLDBIP_01045 90.3 Morganella morganii S4 yhcC TIGR01212 family radical SAM protein
LHKJJB_00990 LHKJJB_00990 90.3 Morganella morganii S3 yhcC TIGR01212 family radical SAM protein
HKOGLL_01030 HKOGLL_01030 90.3 Morganella morganii S5 yhcC TIGR01212 family radical SAM protein
PMI_RS05285 PMI_RS05285 73.5 Proteus mirabilis HI4320 - TIGR01212 family radical SAM protein

Distribution of the homologs in the orthogroup group_615

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_615

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADW6 3.09e-164 462 74 0 299 3 yhcC Protein YhcC Escherichia coli (strain K12)
P0ADW7 3.09e-164 462 74 0 299 3 yhcC Uncharacterized protein YhcC Escherichia coli O157:H7
O35008 3.31e-73 231 38 4 289 3 ytqA Uncharacterized protein YtqA Bacillus subtilis (strain 168)
Q57910 9.28e-44 155 29 4 278 3 MJ0486 Uncharacterized protein MJ0486 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q2KJ61 2.49e-11 67 28 5 163 2 ELP3 Elongator complex protein 3 Bos taurus
Q9H9T3 4.38e-11 67 27 5 163 1 ELP3 Elongator complex protein 3 Homo sapiens
A0A1C7D1B7 9.42e-11 65 31 2 129 1 cbdbA595 tRNA uridine(34) acetyltransferase Dehalococcoides mccartyi (strain CBDB1)
Q9CZX0 2.32e-10 64 25 3 147 1 Elp3 Elongator complex protein 3 Mus musculus
O14023 2.8e-10 64 23 3 163 3 elp3 Elongator complex protein 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q58536 4.47e-10 63 24 5 200 3 MJ1136 tRNA uridine(34) acetyltransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q23651 1.07e-09 62 27 3 134 3 elpc-3 Elongator complex protein 3 Caenorhabditis elegans
Q60LW7 1.17e-09 62 27 3 134 3 elpc-3 Elongator complex protein 3 Caenorhabditis briggsae
Q02908 2.32e-09 62 24 3 147 1 ELP3 Elongator complex protein 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q5ZHS1 2.68e-09 61 25 4 156 2 ELP3 Elongator complex protein 3 Gallus gallus
Q93ZR1 4.41e-09 60 23 3 147 1 HAG3 Elongator complex protein 3 Arabidopsis thaliana
D5VRB9 4.6e-09 60 24 3 155 1 Metin_0452 tRNA uridine(34) acetyltransferase Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)
Q5RIC0 9.26e-09 60 23 3 155 2 elp3 Elongator complex protein 3 Danio rerio
Q6NVL5 9.27e-09 60 23 3 155 2 elp3 Elongator complex protein 3 Xenopus tropicalis
Q7X7L3 1.23e-08 59 24 3 147 2 ELP3 Elongator complex protein 3 Oryza sativa subsp. japonica
Q5HZM6 2.48e-08 58 23 3 155 1 elp3 Elongator complex protein 3 Xenopus laevis
Q1ZXC6 5.38e-08 57 22 3 163 3 elp3 Elongator complex protein 3 Dictyostelium discoideum
Q9VQZ6 6.4e-08 57 20 3 155 1 Elp3 Elongator complex protein 3 Drosophila melanogaster
Q58275 5.92e-06 51 25 6 176 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58882 3.99e-05 48 32 1 98 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58277 4e-05 48 34 2 85 3 MJ0867 Probable threonylcarbamoyladenosine tRNA methylthiotransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A1WVF7 4.51e-05 48 40 1 72 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Halorhodospira halophila (strain DSM 244 / SL1)
B0SPT9 9.94e-05 47 24 6 189 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
B0SGD8 9.94e-05 47 24 6 189 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)
A9FST8 0.000193 46 40 1 70 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Sorangium cellulosum (strain So ce56)
A9WL37 0.00022 46 33 2 83 3 bioB Biotin synthase Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
Q9CGF7 0.000334 45 28 2 97 1 hemW Heme chaperone HemW Lactococcus lactis subsp. lactis (strain IL1403)
A7H6G8 0.000441 45 34 2 79 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Anaeromyxobacter sp. (strain Fw109-5)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04290
Feature type CDS
Gene -
Product TIGR01212 family radical SAM protein
Location 906436 - 907389 (strand: 1)
Length 954 (nucleotides) / 317 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_615
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF16199 Radical_SAM C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1242 General function prediction only (R) R Radical SAM superfamily enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07139 uncharacterized protein - -

Protein Sequence

MQLHDVVNMFGADLQRRYGEKIHKITLHGGFSCPNRDGTLGRGGCTFCNVASFADENTQYDSIEDQLNQQSGKITRAKRYLAYFQAYTSTYAEVELLRQMYESALTQADVVGLCVGTRPDCVPEAVLDLLQYYQQQGYEVWLELGLQTAHDKTLRRINRGHDFACYQATTRAARARGLNVCCHLIVGLPGETAQDNLVTLERVLETGTEGIKLHPLHIVEGSTMAKAWRAGRLPTISLEDYIHIAGEMIRRTPREVVYHRICASARYPTLLAPDWCSNHWHGMNGLWQYLSEHGGQGSACDAKAIGGSADNTVSIVL

Flanking regions ( +/- flanking 50bp)

ATGATTTGGTAAAAAGCTTCCCTGTACTGGATACTGAAAAATAAGAACAGATGCAGCTTCATGATGTTGTAAACATGTTCGGCGCTGACCTTCAGCGCCGTTATGGCGAAAAAATCCATAAAATTACCCTTCACGGCGGTTTCAGCTGCCCTAACCGCGACGGCACCCTCGGGCGCGGCGGCTGCACGTTCTGCAATGTTGCCTCATTTGCTGATGAAAACACACAGTATGATTCTATTGAGGATCAGCTTAATCAGCAGTCCGGAAAAATCACCCGCGCAAAACGCTATCTTGCTTATTTTCAGGCATACACCAGCACATACGCAGAAGTTGAACTGTTACGTCAGATGTATGAATCCGCACTGACTCAGGCGGATGTGGTGGGACTGTGTGTCGGCACCCGTCCGGATTGTGTACCGGAAGCGGTATTGGATCTGTTGCAGTATTATCAGCAGCAGGGTTATGAAGTGTGGCTTGAGCTGGGATTGCAGACCGCGCATGATAAAACTCTCAGACGCATTAACCGCGGGCATGATTTTGCCTGTTATCAGGCAACAACCCGTGCTGCCCGGGCGCGCGGACTGAATGTCTGCTGCCACCTGATTGTCGGGTTGCCGGGAGAAACCGCGCAGGACAATCTGGTTACTCTTGAACGCGTGCTGGAAACCGGGACAGAAGGCATCAAGCTGCATCCGCTGCATATTGTGGAGGGCAGTACTATGGCAAAAGCCTGGCGCGCAGGGCGCTTACCGACTATTTCTCTGGAAGACTATATTCATATTGCCGGTGAGATGATCCGCCGTACACCGCGCGAGGTGGTTTATCACCGCATTTGCGCCAGCGCGCGGTATCCGACGTTGCTGGCTCCTGACTGGTGCAGCAATCACTGGCACGGTATGAACGGACTCTGGCAGTATCTGTCAGAACACGGCGGTCAGGGCAGTGCGTGTGATGCTAAAGCCATCGGCGGGTCTGCTGACAATACTGTGTCCATTGTTCTTTAAAGCGTCCGGCAAGAAATTGTTCCTCCTGCGGGATGCTGAACAAATCGGTT