Homologs in group_688

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_02415 EHELCC_02415 100.0 Morganella morganii S2 yhcC TIGR01212 family radical SAM protein
NLDBIP_01045 NLDBIP_01045 100.0 Morganella morganii S4 yhcC TIGR01212 family radical SAM protein
LHKJJB_00990 LHKJJB_00990 100.0 Morganella morganii S3 yhcC TIGR01212 family radical SAM protein
HKOGLL_01030 HKOGLL_01030 100.0 Morganella morganii S5 yhcC TIGR01212 family radical SAM protein
F4V73_RS04290 F4V73_RS04290 90.3 Morganella psychrotolerans - TIGR01212 family radical SAM protein
PMI_RS05285 PMI_RS05285 77.3 Proteus mirabilis HI4320 - TIGR01212 family radical SAM protein

Distribution of the homologs in the orthogroup group_688

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_688

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADW6 2.33e-169 474 75 0 300 3 yhcC Protein YhcC Escherichia coli (strain K12)
P0ADW7 2.33e-169 474 75 0 300 3 yhcC Uncharacterized protein YhcC Escherichia coli O157:H7
O35008 1.5e-73 231 40 4 275 3 ytqA Uncharacterized protein YtqA Bacillus subtilis (strain 168)
Q57910 1.36e-47 164 30 4 278 3 MJ0486 Uncharacterized protein MJ0486 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A0A1C7D1B7 9.47e-13 71 31 4 161 1 cbdbA595 tRNA uridine(34) acetyltransferase Dehalococcoides mccartyi (strain CBDB1)
O14023 1.78e-10 65 24 3 163 3 elp3 Elongator complex protein 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9H9T3 1e-09 62 24 3 156 1 ELP3 Elongator complex protein 3 Homo sapiens
D5VRB9 1.22e-09 62 26 3 136 1 Metin_0452 tRNA uridine(34) acetyltransferase Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)
Q2KJ61 1.4e-09 62 23 3 156 2 ELP3 Elongator complex protein 3 Bos taurus
Q9CZX0 1.96e-09 61 25 3 154 1 Elp3 Elongator complex protein 3 Mus musculus
Q5RIC0 2.21e-09 61 25 5 164 2 elp3 Elongator complex protein 3 Danio rerio
Q58536 2.74e-09 61 27 3 136 3 MJ1136 tRNA uridine(34) acetyltransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q93ZR1 4.02e-09 60 23 3 148 1 HAG3 Elongator complex protein 3 Arabidopsis thaliana
Q5ZHS1 4.49e-09 60 25 3 156 2 ELP3 Elongator complex protein 3 Gallus gallus
Q02908 4.5e-09 60 23 2 147 1 ELP3 Elongator complex protein 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q7X7L3 4.77e-09 60 25 2 147 2 ELP3 Elongator complex protein 3 Oryza sativa subsp. japonica
Q6NVL5 5.86e-09 60 25 2 155 2 elp3 Elongator complex protein 3 Xenopus tropicalis
Q23651 6.07e-09 60 24 3 156 3 elpc-3 Elongator complex protein 3 Caenorhabditis elegans
Q60LW7 6.36e-09 60 24 3 156 3 elpc-3 Elongator complex protein 3 Caenorhabditis briggsae
Q1ZXC6 3.38e-08 58 22 2 162 3 elp3 Elongator complex protein 3 Dictyostelium discoideum
Q5HZM6 3.98e-08 57 24 4 163 1 elp3 Elongator complex protein 3 Xenopus laevis
Q9VQZ6 7.79e-08 57 22 5 163 1 Elp3 Elongator complex protein 3 Drosophila melanogaster
Q58275 1.31e-07 56 27 7 176 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A1WVF7 1.33e-05 50 42 2 73 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Halorhodospira halophila (strain DSM 244 / SL1)
Q58882 0.000448 45 31 1 98 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
B3EGT4 0.000465 45 31 1 89 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)
Q3JEH9 0.000493 45 37 1 70 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107)
B0UNY0 0.000633 44 36 2 73 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Methylobacterium sp. (strain 4-46)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_01945
Feature type CDS
Gene yhcC
Product TIGR01212 family radical SAM protein
Location 76103 - 77005 (strand: 1)
Length 903 (nucleotides) / 300 (amino acids)
In genomic island -

Contig

Accession contig_2
Length 292399 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_688
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF16199 Radical_SAM C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1242 General function prediction only (R) R Radical SAM superfamily enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07139 uncharacterized protein - -

Protein Sequence

MQLHTVVNMFGADLQRRYGEKIHKITLHGGFSCPNRDGTLGRGGCTFCNVASFADENAQYDSIEDQLSRQSGKITRAKRYLAYFQAYTSTYAEVELLREMYESALTQADVVGLCVGTRPDCVPEAVLELLQSYQQQGYEVWLELGLQTAHDKTLKRINRGHDFACYQATTRAARERGLKVCCHLITGLPGETAADNLITLERVLETGVEGIKLHPLHIVEGSTMAKAWRAGRLPTISLEEYVATAGEMIRHTPPDVIYHRICASARRPTLLAPDWCSNRWLGMNGLWQYLLANGGQGSAI

Flanking regions ( +/- flanking 50bp)

TCGACGATCTGGTGAAAAGCTTCCCTGAGCTGGATACCGAATAATTTCCGATGCAGCTTCACACAGTCGTTAACATGTTCGGCGCTGATCTTCAGCGCCGTTATGGCGAAAAAATCCATAAAATCACCCTCCACGGCGGCTTCAGCTGCCCTAACCGCGACGGCACCCTCGGGCGCGGCGGTTGTACCTTCTGTAATGTGGCTTCTTTTGCGGATGAAAATGCACAGTATGATTCCATTGAGGATCAACTGAGCCGGCAGTCCGGAAAAATCACCCGCGCCAAACGTTATCTTGCCTATTTCCAGGCTTATACCAGCACCTACGCGGAAGTTGAACTGCTGCGTGAGATGTATGAATCCGCACTGACTCAGGCCGATGTGGTGGGATTGTGTGTCGGTACGCGGCCGGACTGTGTGCCGGAGGCGGTGCTGGAGCTGCTGCAAAGCTATCAGCAGCAGGGCTATGAGGTATGGCTGGAACTGGGATTACAGACCGCCCATGATAAAACCCTGAAACGTATCAACCGCGGTCATGATTTTGCCTGTTATCAGGCCACCACCCGGGCCGCCCGTGAACGCGGGCTGAAAGTGTGTTGTCATCTGATCACCGGTCTGCCGGGAGAAACCGCAGCCGATAATCTCATCACACTTGAGCGTGTGCTGGAGACCGGCGTTGAAGGCATCAAACTGCATCCGCTGCATATTGTGGAAGGCAGCACCATGGCAAAAGCCTGGCGGGCGGGGCGCTTACCCACCATTTCTCTCGAAGAGTATGTCGCCACCGCGGGAGAGATGATCCGTCACACCCCGCCTGACGTTATTTATCACCGCATCTGCGCCAGCGCACGGCGTCCGACTTTACTGGCACCGGACTGGTGCAGCAACCGCTGGCTCGGCATGAACGGCCTGTGGCAGTATCTGCTGGCAAACGGCGGCCAGGGCAGCGCAATCTGAGCGTGAATTACAGCCAGCGCCGTGTCTGCTGGCAATAGGCCGCCCATTCC