COG1242


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1242, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Radical SAM superfamily enzyme
Function(s) descr. General function prediction only (R)

Occurence in the database

COG1242 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_615 FBDBKF_01945 76103 77005 1 yhcC TIGR01212 family radical SAM protein Morganella morganii S1
1 group_615 EHELCC_02415 463923 464825 1 yhcC TIGR01212 family radical SAM protein Morganella morganii S2
2 group_615 NLDBIP_01045 215311 216213 -1 yhcC TIGR01212 family radical SAM protein Morganella morganii S4
3 group_615 LHKJJB_00990 176472 177374 1 yhcC TIGR01212 family radical SAM protein Morganella morganii S3
4 group_615 HKOGLL_01030 181983 182885 1 yhcC TIGR01212 family radical SAM protein Morganella morganii S5
5 group_615 F4V73_RS04290 906436 907389 1 TIGR01212 family radical SAM protein Morganella psychrotolerans
6 group_615 PMI_RS05285 1154189 1155118 1 TIGR01212 family radical SAM protein Proteus mirabilis HI4320