Homologs in group_212

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13730 FBDBKF_13730 18.0 Morganella morganii S1 - MFS transporter
EHELCC_11400 EHELCC_11400 18.0 Morganella morganii S2 - MFS transporter
NLDBIP_11745 NLDBIP_11745 18.0 Morganella morganii S4 - MFS transporter
LHKJJB_11605 LHKJJB_11605 18.0 Morganella morganii S3 - MFS transporter
HKOGLL_10215 HKOGLL_10215 18.0 Morganella morganii S5 - MFS transporter
F4V73_RS12600 F4V73_RS12600 17.9 Morganella psychrotolerans - nucleoside permease
PMI_RS07650 PMI_RS07650 24.5 Proteus mirabilis HI4320 - MFS transporter
PMI_RS14680 PMI_RS14680 18.6 Proteus mirabilis HI4320 - MFS transporter

Distribution of the homologs in the orthogroup group_212

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_212

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P18817 4.59e-95 294 40 4 388 3 lacY Lactose permease Klebsiella oxytoca
P02920 4.63e-95 294 41 3 374 1 lacY Lactose permease Escherichia coli (strain K12)
P16552 5.66e-93 289 41 3 380 1 rafB Raffinose permease Escherichia coli
P47234 9.16e-92 286 41 5 391 3 lacY Lactose permease Citrobacter freundii
P30000 7.85e-91 283 40 4 381 1 cscB Sucrose permease Escherichia coli
P96517 8.22e-89 278 42 5 399 1 melY Melibiose permease Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)
P59832 2.47e-21 92 47 1 101 3 lacY Lactose permease (Fragment) Klebsiella pneumoniae
P39589 7.44e-06 51 21 11 410 3 ywbF Uncharacterized transporter YwbF Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04170
Feature type CDS
Gene -
Product MFS transporter
Location 939151 - 940413 (strand: 1)
Length 1263 (nucleotides) / 420 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_212
Orthogroup size 9
N. genomes 7

Actions

Genomic region

Domains

PF01306 LacY proton/sugar symporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2223 Inorganic ion transport and metabolism (P) P Nitrate/nitrite transporter NarK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02532 MFS transporter, OHS family, lactose permease - -

Protein Sequence

MNKDAKKYYVILSALLFFFFFTWSSSFSLISIWLHQYVGLKATDTGLIFSAISLIALCAQPLYGFIQDKLGLRKNLLLVIAVLLILSGPFFLSFAAILRWNIFIGSILGGLYVGMTFNAGIGVLESYTERVSRIRGFEYGRARMWGSLGWASATFIAGHNINIDPNYNFFMASIAGVIFLILLALLKTDKPDAFNQLEHGKPSALTINDALNLLSLPRFWALILFVVGTCIYSVYDQQFPVFFSSQFASLQQGNEMYGYLNSLQVFLEAGGMFVAPFLVNKIGAKNGLLLASSVMAARIIGSGLVEGPIMISCMKLLHAVELPILLISIFKYNSQHFDKRLSSTLYLVGFQCVSSIVATLLSPLAGYGYDHYGFAPTYMVMGCMVVGTTLLSAVLLRADSKALPQHDMTDLDSNNKAQPI

Flanking regions ( +/- flanking 50bp)

AGTTAACGTTAACATTCTGGTCGCAAAATGACTTTATAAGGCGCTTAACAATGAATAAAGATGCTAAAAAATACTATGTGATCTTAAGTGCGTTGCTATTTTTCTTCTTTTTTACATGGTCTTCATCGTTTTCATTAATCTCTATTTGGTTACATCAATATGTTGGACTTAAAGCAACAGATACTGGTTTGATATTCTCGGCTATATCATTGATTGCTTTATGTGCCCAGCCACTCTATGGCTTTATTCAAGATAAACTGGGTTTACGCAAAAATTTACTGCTGGTTATCGCGGTATTGCTTATTTTATCGGGGCCTTTTTTTCTTAGCTTTGCGGCAATATTGCGCTGGAATATTTTTATTGGCTCTATTCTCGGAGGGCTCTATGTAGGAATGACTTTTAATGCCGGGATCGGCGTTTTAGAATCTTATACTGAGCGTGTTAGCCGTATTCGTGGTTTTGAGTATGGCAGGGCGAGGATGTGGGGCTCTTTGGGATGGGCATCGGCAACTTTTATTGCTGGGCATAATATCAATATCGATCCTAACTATAACTTTTTTATGGCATCGATAGCGGGGGTGATCTTCTTAATTCTGTTGGCGTTACTAAAAACAGATAAACCAGATGCTTTTAATCAATTAGAGCATGGTAAACCTTCTGCACTCACCATCAATGATGCATTAAACTTACTGTCATTACCGCGCTTTTGGGCATTAATATTATTTGTGGTCGGAACCTGTATTTATAGCGTCTACGATCAACAGTTCCCGGTTTTCTTCTCTTCACAATTTGCATCATTACAGCAAGGTAATGAGATGTACGGGTATCTTAATTCCTTACAGGTTTTCTTAGAAGCGGGAGGAATGTTTGTTGCGCCTTTCTTAGTGAACAAAATAGGGGCGAAAAACGGTTTATTATTGGCGAGTAGTGTGATGGCTGCGCGTATTATTGGTTCTGGATTAGTTGAAGGGCCGATAATGATCTCTTGTATGAAGTTATTACATGCCGTTGAGCTTCCTATCCTGTTAATTTCTATTTTTAAATATAACAGCCAACATTTTGATAAGCGTTTATCTTCTACATTGTATTTAGTCGGTTTCCAATGTGTCAGTTCCATTGTGGCAACATTGTTATCCCCATTAGCGGGTTATGGCTATGATCATTACGGTTTTGCCCCTACGTATATGGTGATGGGATGTATGGTAGTCGGTACTACGTTACTTTCTGCTGTGTTGTTACGTGCTGACTCGAAAGCATTACCACAACATGATATGACTGATCTCGATAGTAACAATAAAGCTCAACCGATTTAAGCGGGTAGGCATTAGCTATTACAGCGCTGCTAGATAATTTTTATGGCTAC