Homologs in group_546

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01300 FBDBKF_01300 49.7 Morganella morganii S1 tssE type VI secretion system baseplate subunit TssE
EHELCC_00245 EHELCC_00245 49.7 Morganella morganii S2 tssE type VI secretion system baseplate subunit TssE
NLDBIP_03215 NLDBIP_03215 49.7 Morganella morganii S4 tssE type VI secretion system baseplate subunit TssE
LHKJJB_04730 LHKJJB_04730 49.7 Morganella morganii S3 tssE type VI secretion system baseplate subunit TssE
HKOGLL_02315 HKOGLL_02315 49.7 Morganella morganii S5 tssE type VI secretion system baseplate subunit TssE
F4V73_RS02370 F4V73_RS02370 45.5 Morganella psychrotolerans tssE type VI secretion system baseplate subunit TssE

Distribution of the homologs in the orthogroup group_546

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_546

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03675
Feature type CDS
Gene tssE
Product type VI secretion system baseplate subunit TssE
Location 827377 - 827808 (strand: -1)
Length 432 (nucleotides) / 143 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_546
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04965 Baseplate wedge protein gp25

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3518 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11905 type VI secretion system protein - -

Protein Sequence

MASNYGWQANAGASLFERIRGKNLGFSHRSRTNTLIESIKQNLNYILNARPDGCQGTPPLGIPDLNDATQSTVDFKSHLEDSISSCIIAYEPRISKVVVKFLEEDADSLSLQFNINAFIDLENKQQLIEFNVYLDNNRRYQLK

Flanking regions ( +/- flanking 50bp)

GCAAACTTTGAATTATCACTTGTTGGTCGTCTTGATAAAGAGTAACGGTGATGGCATCCAATTATGGCTGGCAGGCTAATGCTGGCGCCAGCTTATTTGAACGGATCCGAGGGAAAAACTTAGGTTTTTCCCATCGTTCGCGAACAAATACACTCATTGAATCAATAAAACAGAATTTAAATTACATCTTAAATGCTAGACCTGATGGTTGCCAAGGAACGCCACCCTTAGGGATCCCTGATTTAAATGATGCGACTCAATCTACGGTTGATTTTAAATCTCACCTAGAAGATAGCATTAGTAGTTGCATTATTGCGTATGAACCACGGATCAGCAAAGTTGTAGTGAAATTTCTTGAAGAAGATGCAGATAGTTTATCTTTACAATTTAATATTAATGCTTTTATTGATTTAGAAAATAAGCAGCAACTTATTGAATTTAATGTGTATTTAGATAATAACCGTAGATATCAGCTTAAATAGCATTAATATGTCATCAAAATCCTACTTTACCAATGAATCAGAATACTTAA