Homologs in group_621

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01300 FBDBKF_01300 82.8 Morganella morganii S1 tssE type VI secretion system baseplate subunit TssE
EHELCC_00245 EHELCC_00245 82.8 Morganella morganii S2 tssE type VI secretion system baseplate subunit TssE
NLDBIP_03215 NLDBIP_03215 82.8 Morganella morganii S4 tssE type VI secretion system baseplate subunit TssE
LHKJJB_04730 LHKJJB_04730 82.8 Morganella morganii S3 tssE type VI secretion system baseplate subunit TssE
HKOGLL_02315 HKOGLL_02315 82.8 Morganella morganii S5 tssE type VI secretion system baseplate subunit TssE
PMI_RS03675 PMI_RS03675 45.5 Proteus mirabilis HI4320 tssE type VI secretion system baseplate subunit TssE

Distribution of the homologs in the orthogroup group_621

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_621

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02370
Feature type CDS
Gene tssE
Product type VI secretion system baseplate subunit TssE
Location 504446 - 504883 (strand: -1)
Length 438 (nucleotides) / 145 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_621
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04965 Baseplate wedge protein gp25

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3518 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11905 type VI secretion system protein - -

Protein Sequence

MGALYRRQTAQPIRLFERIRGEHSGASRQSRITALTASVKKHLTLVLNTHPETCQSSRELGVIDLNDATATAVDFRVSLEAAIRNCILHYEPRISDVTVEGLIDESNPLLLEFRITALVLLESQSQVIEFNMQMDSHRHYRLKQA

Flanking regions ( +/- flanking 50bp)

GCGAGTTTCGAATTGTCACTGGTTGGTCGCCTCGATAAGGAATAACAGGAATGGGGGCGCTTTATCGTCGTCAGACCGCGCAACCGATCCGTCTTTTTGAGCGGATCAGGGGGGAGCACTCCGGTGCTTCCCGCCAGTCGCGTATCACAGCACTGACCGCTTCAGTAAAAAAACACCTGACACTGGTGCTCAATACTCATCCTGAAACCTGCCAAAGCAGCCGGGAACTGGGCGTTATTGACCTGAATGATGCCACTGCAACTGCAGTGGATTTCAGAGTCAGTCTGGAGGCGGCTATCAGGAACTGTATTTTGCACTATGAGCCACGGATAAGTGACGTCACTGTGGAGGGGCTTATTGATGAAAGCAATCCCCTGCTCCTCGAGTTTCGGATTACTGCTTTAGTACTGCTGGAAAGTCAGTCACAGGTAATTGAATTTAATATGCAGATGGACAGTCACCGGCACTACAGACTGAAACAGGCTTGAATGTATGCCCCGTAATCCCTATTTTTCTGATGAACTGGAATATCTGCAAT