Orthogroup:group_546


Homologs in group_546

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01300 FBDBKF_01300 Morganella morganii S1 tssE type VI secretion system baseplate subunit TssE
EHELCC_00245 EHELCC_00245 Morganella morganii S2 tssE type VI secretion system baseplate subunit TssE
NLDBIP_03215 NLDBIP_03215 Morganella morganii S4 tssE type VI secretion system baseplate subunit TssE
LHKJJB_04730 LHKJJB_04730 Morganella morganii S3 tssE type VI secretion system baseplate subunit TssE
HKOGLL_02315 HKOGLL_02315 Morganella morganii S5 tssE type VI secretion system baseplate subunit TssE
F4V73_RS02370 F4V73_RS02370 Morganella psychrotolerans tssE type VI secretion system baseplate subunit TssE
PMI_RS03675 PMI_RS03675 Proteus mirabilis HI4320 tssE type VI secretion system baseplate subunit TssE

Distribution of group_546 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_546 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_546

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_546.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssE 7

Product

# Product Occurence
1 type VI secretion system baseplate subunit TssE 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3518 7 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11905 7 type VI secretion system protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04965 7 Baseplate wedge protein gp25

Protein length

Min length 143
Max length 145
Mean length (sd) 144.7 (0.8)
Median length 145.0

Protein length distribution