COG3518


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3518, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted component of the type VI protein secretion system
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3518 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_546 FBDBKF_01300 251135 251572 1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S1
1 group_546 EHELCC_00245 57296 57733 -1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S2
2 group_546 NLDBIP_03215 622403 622840 1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S4
3 group_546 LHKJJB_04730 229644 230081 1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S3
4 group_546 HKOGLL_02315 57501 57938 -1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S5
5 group_3800 F4V73_RS00080 21449 21892 -1 tssE type VI secretion system baseplate subunit TssE Morganella psychrotolerans
6 group_546 F4V73_RS02370 504446 504883 -1 tssE type VI secretion system baseplate subunit TssE Morganella psychrotolerans
7 group_4066 F4V73_RS07010 1456165 1456590 -1 GPW/gp25 family protein Morganella psychrotolerans
8 group_3800 F4V73_RS09310 1955551 1956045 -1 GPW/gp25 family protein Morganella psychrotolerans
9 group_4178 F4V73_RS16730 168931 169359 -1 tssE type VI secretion system baseplate subunit TssE Morganella psychrotolerans
10 group_546 PMI_RS03675 827377 827808 -1 tssE type VI secretion system baseplate subunit TssE Proteus mirabilis HI4320