Homologs in group_554

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01370 FBDBKF_01370 48.1 Morganella morganii S1 impG Type VI secretion system protein ImpG
EHELCC_00175 EHELCC_00175 48.1 Morganella morganii S2 impG Type VI secretion system protein ImpG
NLDBIP_03285 NLDBIP_03285 48.1 Morganella morganii S4 impG Type VI secretion system protein ImpG
LHKJJB_04800 LHKJJB_04800 48.1 Morganella morganii S3 impG Type VI secretion system protein ImpG
HKOGLL_02245 HKOGLL_02245 48.1 Morganella morganii S5 impG Type VI secretion system protein ImpG
F4V73_RS02305 F4V73_RS02305 48.4 Morganella psychrotolerans - type VI secretion system baseplate subunit TssF

Distribution of the homologs in the orthogroup group_554

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_554

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I744 2.23e-05 51 34 1 87 1 tssF1 Type VI secretion system component TssF1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03610
Feature type CDS
Gene -
Product type VI secretion system baseplate subunit TssF
Location 808353 - 810089 (strand: -1)
Length 1737 (nucleotides) / 578 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_554
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF05947 Type VI secretion system, TssF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3519 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasA

Protein Sequence

MSEIKYIKEKQYLQKLFSEYADKAPHLASVLDPQDPQTSYLLEGFAFLSARLQDKIDDAFPEITLPLLQRLNSQAIKGLPSTTIIQIDQSEILPYPMEINEKHLVIGDNGAQFSFCHNFTIMPYSILDRKITQHPNRSCISLEILYRGDVELTQTNALNVFLGENKTTSDILLLAFSQYFEKIEVVHNGERYEGDPLNYAFEPKIGNDYKIFPQKNNSFSAPQRLLEGLYLPHVHHFIELDIPQIVTQLDWKQQQRFVVNIYFSQQLPLTQEECNQSFFLNCAPAIDSEAKHTLLIDFKKNKSSYLLPIPTHHYLADLDKIELSLEPHELARGIYCHFYPTTELTAASRLMPQFHKAIFYSLTMEKNITGHTLYYLNFFDNKGDPMVTPPSLHFACVYIGFEQYKRNELGLLNKHSEKMPDAVKTGNITLLSSCYPPIVNNHHFWKLLSHYSANGSMLMSLDTIKHMISDYILYRDTDRQITRKCERLLNGLVELKTHLYDYILKGKPYRCLSLSLFIDETQYENRGEAFVFTTHLYHFFPFCLSENMLLEMSVTLNDQKNTTWYLSPSPLRGYKSMI

Flanking regions ( +/- flanking 50bp)

TGAACAACAAGGTTTAAAACCCGGCTCATATTCATCTTTTGGATTAGATCATGAGTGAAATTAAATATATTAAAGAAAAGCAGTACTTACAAAAACTGTTCAGTGAGTATGCAGATAAAGCGCCACATTTAGCGAGCGTACTTGATCCTCAAGATCCACAAACAAGTTATCTCTTAGAAGGCTTTGCTTTTTTATCTGCTCGTTTACAAGATAAAATTGATGATGCTTTTCCTGAGATCACATTACCCCTACTGCAACGACTAAATTCCCAAGCCATTAAAGGCCTACCATCAACAACAATTATCCAAATTGACCAAAGTGAAATTCTCCCCTATCCCATGGAGATTAATGAAAAACATTTGGTGATTGGCGACAACGGGGCACAATTTAGTTTCTGCCATAATTTCACCATCATGCCTTATAGCATTTTGGATAGAAAAATTACTCAGCATCCAAACCGCTCTTGTATCTCTCTTGAAATATTATATCGTGGTGATGTGGAATTAACTCAAACAAATGCACTTAATGTTTTTTTAGGGGAAAATAAAACCACCTCAGACATTTTATTACTCGCATTTAGTCAATATTTTGAAAAAATTGAGGTGGTACATAACGGTGAACGTTATGAAGGCGATCCTCTTAATTATGCTTTTGAACCCAAAATTGGCAATGACTATAAAATCTTCCCACAGAAAAATAACTCATTTTCTGCACCACAACGTTTATTAGAAGGTCTTTATTTACCCCATGTTCACCATTTTATTGAGTTAGATATACCACAAATAGTGACTCAATTAGATTGGAAACAACAGCAGCGGTTTGTTGTGAATATCTATTTCAGTCAGCAACTTCCTTTAACTCAAGAAGAGTGTAATCAGAGCTTTTTTTTAAACTGTGCTCCAGCGATTGATAGTGAAGCAAAACATACACTTTTAATTGATTTTAAAAAGAATAAATCAAGTTATTTACTCCCTATTCCAACCCATCACTATTTGGCCGATCTTGATAAAATTGAGTTATCACTAGAGCCTCATGAGCTAGCGCGTGGCATATACTGTCATTTTTATCCTACGACAGAATTAACCGCCGCCTCTCGTTTAATGCCCCAATTTCATAAAGCCATTTTCTATTCATTAACAATGGAGAAAAATATTACTGGGCATACACTTTATTATTTGAATTTCTTTGATAATAAAGGTGATCCTATGGTCACACCGCCTAGTTTACATTTTGCATGTGTTTATATTGGCTTTGAACAATATAAAAGAAATGAGTTAGGTCTATTAAATAAACACAGCGAAAAAATGCCTGATGCAGTAAAAACAGGAAATATCACATTATTATCATCTTGTTATCCACCTATTGTAAATAATCACCATTTTTGGAAATTGTTATCTCATTACAGTGCTAATGGTTCAATGTTAATGTCATTAGATACTATTAAACATATGATTTCTGATTATATTCTTTACCGAGATACTGATAGGCAGATCACTCGAAAATGTGAGCGATTATTAAATGGACTCGTTGAACTAAAAACACATTTATATGACTATATTTTAAAAGGTAAACCCTATCGTTGTTTATCTTTATCGCTATTCATTGACGAAACACAATATGAAAATAGAGGTGAAGCTTTTGTCTTTACTACACATCTTTACCATTTTTTCCCGTTCTGTTTATCTGAAAATATGTTATTGGAAATGTCAGTTACACTCAACGATCAGAAAAACACCACTTGGTATTTATCTCCCTCACCACTAAGGGGCTATAAATCAATGATTTAATAATTAGTAGTATTAACTATGGCACATAATAAAAGTGTTTATAAAGTTGA