Homologs in group_1244

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07235 FBDBKF_07235 51.9 Morganella morganii S1 ldtD L,D-transpeptidase
EHELCC_03735 EHELCC_03735 51.9 Morganella morganii S2 ldtD L,D-transpeptidase
NLDBIP_03735 NLDBIP_03735 51.9 Morganella morganii S4 ldtD L,D-transpeptidase
LHKJJB_09565 LHKJJB_09565 51.9 Morganella morganii S3 ldtD L,D-transpeptidase
HKOGLL_09410 HKOGLL_09410 51.9 Morganella morganii S5 ldtD L,D-transpeptidase
F4V73_RS01420 F4V73_RS01420 52.7 Morganella psychrotolerans ldtD L,D-transpeptidase

Distribution of the homologs in the orthogroup group_1244

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1244

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22525 1.32e-173 508 44 4 600 1 ycbB Probable L,D-transpeptidase YcbB Escherichia coli (strain K12)
P44285 2.4e-76 253 50 5 257 3 HI_1667 Putative L,D-transpeptidase HI_1667 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03590
Feature type CDS
Gene ldtD
Product L,D-transpeptidase
Location 804395 - 806110 (strand: 1)
Length 1716 (nucleotides) / 571 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1244
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01471 Putative peptidoglycan binding domain
PF03734 L,D-transpeptidase catalytic domain
PF20142 Scaffold domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2989 Cell wall/membrane/envelope biogenesis (M) M Murein L,D-transpeptidase YcbB/YkuD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21470 L,D-transpeptidase YcbB - -

Protein Sequence

MAQQAIKRAITYSVVIGTLLSGHNVIASESETPPLFTSETPALVPAFTEDVATQDTLNSPSVSKQEVSTKLQSWLPSEYKPLYFKQLVDVYQSNDLALIWQDEQITQQLEQQLAEVALTGIQPQFGRWLTLLETAQLTPEARDIILSDAFLGYISFVEQINQSGTTLLYRAAIQALPAPTVQAVEHFQLNLQQNTLGRFVVSFAPSHPYYPLMKEEVRKQLHQEVIWPVMEGKNSLKPNQSAEEVIALRQILRNLNLLPQLAESEQEVATTIYDAPLIAAVKSFQAAHGLETDGIIGRQTRNWLNMTPIQRAGIMALNIQRLRLTPPIGDTGIWVNIPDYSLYFYANNQLILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNVPTSMTRKDIVPKGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWENISAANFPYRIWQAPGPTNSLGRYKFNMPNSEAIYLHDTPNHNLFTKNMRAISSGCIRVNKAAQLATILLGDAGWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAEENAPQYRADIYNYDQSINNATSFLENIKKYL

Flanking regions ( +/- flanking 50bp)

TAATATTTTACGATAGCAAAATAATAACAAGGGATGAGGCACTGAGGACTATGGCGCAACAAGCAATTAAAAGAGCAATAACGTATTCGGTCGTAATAGGTACACTTCTCTCAGGGCATAATGTTATTGCCTCAGAAAGTGAAACACCACCGCTATTCACATCAGAAACACCTGCATTAGTACCCGCATTCACAGAAGATGTGGCAACACAAGATACATTAAATTCACCATCAGTGAGTAAGCAGGAAGTTAGTACTAAACTACAATCTTGGTTACCAAGCGAATATAAACCACTTTACTTTAAGCAACTCGTGGATGTTTATCAAAGCAATGATTTAGCACTGATTTGGCAAGATGAACAAATTACACAACAACTAGAGCAGCAATTGGCAGAGGTTGCCTTAACTGGAATTCAACCACAATTTGGACGTTGGTTAACGCTATTAGAAACAGCACAATTAACGCCAGAAGCACGAGATATTATTTTATCTGACGCTTTTTTAGGTTATATCAGCTTTGTTGAACAGATTAATCAATCAGGAACAACACTGTTATATCGCGCTGCGATACAAGCATTACCGGCACCAACTGTGCAAGCTGTCGAGCATTTCCAACTCAATCTACAACAAAATACCTTAGGGCGCTTTGTCGTCTCCTTTGCACCCTCACACCCTTACTATCCATTAATGAAAGAGGAAGTGCGCAAACAGCTTCATCAAGAGGTTATTTGGCCCGTCATGGAAGGGAAAAATTCATTAAAGCCAAACCAATCGGCAGAAGAAGTTATTGCATTAAGACAAATATTGCGTAACTTAAATTTACTGCCTCAATTGGCTGAAAGTGAGCAAGAAGTAGCAACAACGATTTATGATGCGCCTTTAATTGCTGCTGTAAAATCGTTTCAAGCGGCCCATGGATTAGAAACTGACGGTATTATTGGTAGACAGACGCGTAATTGGTTAAATATGACACCAATACAGCGTGCTGGAATTATGGCATTAAATATACAGCGGTTACGTTTAACCCCACCTATTGGTGACACTGGAATTTGGGTTAATATTCCTGATTACTCCCTCTATTTTTATGCTAATAATCAACTGATTTTAGATTCAAAAGTGATTGTTGGTCGACCAGATAGAAAAACCCCCATTATGAGTAGTGCGCTTAATAATGTTGTGGTTAATCCGCCTTGGAATGTACCTACGAGTATGACGCGTAAAGATATAGTTCCAAAAGGAAAGGCTGATCCTAGTTATTTTAGCCGTAAAGGTTATACGATTTATTCAGGGTGGGGGAATGACGCCTATCCAATTAATCCTTACGATATAGATTGGGAAAACATCTCTGCGGCTAATTTTCCATATCGCATTTGGCAAGCCCCTGGGCCAACTAACTCCCTAGGTCGATATAAATTTAATATGCCAAACTCTGAAGCAATTTATCTGCATGACACACCAAACCACAATTTATTTACTAAAAATATGCGAGCAATTAGTTCAGGTTGTATTCGTGTGAATAAAGCGGCGCAATTAGCGACGATATTATTAGGTGATGCAGGATGGAAACAAGATAGAATTGATGCAGCCTTAAAACGAGGTTCAACACAATATGCACCAATTCCAGAACGTATCCCTGTCTATTTATATTATCAAACAGCTTGGGTAGCAGAAGAAAATGCCCCTCAATATCGAGCAGATATTTATAATTATGACCAAAGCATTAATAATGCAACCTCTTTTTTAGAGAATATTAAGAAATATTTGTAATAGAACAGATGGCTAACAACAATAAAGAGTAAGTATTATGCTTGCTCTTT