Homologs in group_1515

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09795 FBDBKF_09795 78.9 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_04595 EHELCC_04595 78.9 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
NLDBIP_04595 NLDBIP_04595 78.9 Morganella morganii S4 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_14035 LHKJJB_14035 78.9 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
HKOGLL_12500 HKOGLL_12500 78.9 Morganella morganii S5 cydB cytochrome d ubiquinol oxidase subunit II
F4V73_RS00550 F4V73_RS00550 75.7 Morganella psychrotolerans cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_1515

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1515

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABK2 0.0 555 67 1 385 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 0.0 555 67 1 385 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 0.0 555 67 1 385 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P45020 2.42e-154 442 57 2 385 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P26458 3.33e-147 424 54 2 385 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P94365 1.23e-60 202 31 3 369 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02825
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 623082 - 624239 (strand: 1)
Length 1158 (nucleotides) / 385 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1515
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MFDYEVLRFVWWLLIGILLIGFAVTDGFDMGVGVLLRVIAKDDTERRILINSVAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYFGMIFVLAALFFRPVGFDYRSKLESPKWRGMWDWGIFIGSFVPPLVIGVAFGNLLQGVPLEVDSMQRVSYNGTTNALINLLSLLNPYGLLAGVISLMMIVAQGASYLQMRTTGELHERTRKATYITSLITFIAFALAGVWLIYGIDGFIITSAVDTAGPSSPLLKTVSHEAGAWMTNYNNYPILWILPALGLLSPLLAVVATKANKGAWAFLFTSLTIACVILTFGVTLFPFIMPSSTFPDVSLTIWDATSSLFTLQVMTVVAIIFVPIVLLYTIWCYWKMHGRLDKKFIEGNNHTLY

Flanking regions ( +/- flanking 50bp)

GAACAGAAGACAGCTTCTTCTGCACAAAGTAAGTAACACAGGAGTCCACTATGTTTGATTATGAAGTATTGCGGTTTGTTTGGTGGCTACTGATTGGTATCTTACTGATCGGCTTTGCGGTCACCGATGGTTTTGATATGGGTGTCGGTGTGTTATTGCGCGTCATTGCAAAAGATGACACAGAACGCCGTATTTTAATTAACTCTGTTGCACCTCACTGGGATGGTAACCAAGTTTGGTTAATCACTGCCGGTGGTGCATTATTCGCTGCATGGCCAATGGTATATGCTGCGGCATTCTCTGGTTTCTATTTTGGTATGATCTTCGTACTGGCGGCATTATTCTTCCGTCCAGTAGGTTTTGACTACCGTTCTAAATTAGAATCACCAAAATGGCGTGGTATGTGGGATTGGGGTATCTTTATTGGTAGCTTTGTTCCACCATTAGTTATCGGTGTTGCTTTTGGTAACCTGTTACAAGGTGTTCCATTAGAAGTCGATAGCATGCAACGTGTATCTTATAATGGTACAACTAACGCACTAATTAACCTGTTAAGCCTATTAAACCCATATGGTTTATTAGCTGGTGTTATTAGCTTAATGATGATTGTGGCACAGGGTGCTAGCTATCTTCAAATGCGTACTACCGGTGAGCTGCATGAGCGTACTCGTAAAGCAACTTACATTACCTCTTTAATCACTTTTATTGCTTTTGCATTAGCAGGCGTGTGGTTAATCTACGGTATTGATGGCTTTATTATCACTAGTGCGGTTGATACTGCGGGTCCTTCTTCTCCGTTGTTGAAAACAGTTTCTCACGAAGCTGGCGCTTGGATGACGAACTACAACAACTATCCTATTTTATGGATCTTACCGGCATTAGGTCTGTTAAGTCCTTTATTAGCGGTTGTTGCAACTAAAGCAAACAAAGGAGCTTGGGCATTCCTGTTCACTTCACTGACTATTGCTTGTGTTATCCTAACGTTTGGTGTAACCCTGTTCCCATTCATTATGCCATCAAGCACATTCCCTGATGTAAGCTTGACAATTTGGGATGCAACTTCAAGCCTGTTCACTTTACAAGTGATGACAGTAGTCGCGATTATCTTTGTACCTATCGTTCTCCTCTACACTATCTGGTGTTACTGGAAAATGCATGGTCGCCTCGATAAGAAATTTATCGAAGGCAATAATCATACTCTTTACTAAGGAGCATAGAGAATGTGGTATTTTGCATGGCTTCTCGGCACACTCTTCGC