Homologs in group_1563

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09795 FBDBKF_09795 100.0 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_04595 EHELCC_04595 100.0 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
NLDBIP_04595 NLDBIP_04595 100.0 Morganella morganii S4 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_14035 LHKJJB_14035 100.0 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
F4V73_RS00550 F4V73_RS00550 90.5 Morganella psychrotolerans cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS02825 PMI_RS02825 78.9 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_1563

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1563

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABK2 0.0 561 70 1 380 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 0.0 561 70 1 380 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 0.0 561 70 1 380 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P45020 1.54e-160 458 60 1 380 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P26458 1.26e-148 428 55 2 380 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P94365 9.3e-61 202 32 5 367 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12500
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 52532 - 53674 (strand: -1)
Length 1143 (nucleotides) / 380 (amino acids)
In genomic island -

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1563
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Metabolic pathways
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MFDYEILRFVWWILIGVLLIGFTVTDGFDMGVGVLLRVIGRNDTERRIMINAIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYIAMILVLAALFFRPVGFDYRSKLESPKWRGMWDWGIFIGSFVPSLVIGVAFGNLLQGVPVEVNSQLQVSYAGSFFGLLNPYGLLAGLISLMMIVAHGATYLQMRTTGDLHVRVRKATTITALLTFVLFAAAGAWLMWGGIDGFRVVSDIDHFGASNPVNKEVVQEAGAWMANFNAYPILWILPAIGLASPLLVVMFTAMDKGAWAFLFTSLTIAGVILTCGTAMFPFIMPSSIDPNVSLTMWDATSSLFTLQVMTVVAIIFVPLVLLYTIWCYVKMAGRIDKSFIEENKHTLY

Flanking regions ( +/- flanking 50bp)

CATTTCGAAACGTCCCCGGCACAAGACGCTAAGTAAACAGGAGCCCACTTATGTTTGATTATGAAATATTACGGTTTGTATGGTGGATCCTGATTGGCGTACTGCTGATTGGCTTCACTGTAACTGATGGCTTTGATATGGGCGTGGGTGTTCTGCTGCGTGTTATCGGCAGAAATGATACTGAACGCCGTATCATGATTAACGCGATTGCACCGCACTGGGACGGTAACCAGGTATGGCTTATCACCGCGGGTGGTGCACTGTTCGCAGCATGGCCGATGGTCTATGCTGCAGCATTCTCCGGTTTCTATATCGCAATGATTCTGGTCCTGGCGGCATTATTCTTCCGTCCGGTCGGTTTTGACTATCGTTCAAAACTGGAATCACCAAAATGGCGCGGTATGTGGGACTGGGGTATCTTTATCGGCAGTTTCGTACCGTCATTAGTGATCGGTGTGGCATTCGGTAACCTGTTACAGGGTGTACCGGTTGAAGTTAACTCCCAGCTGCAGGTGTCTTATGCAGGGAGCTTCTTCGGTCTGCTGAACCCGTACGGTCTGTTAGCCGGTTTAATCAGCCTGATGATGATCGTGGCGCACGGTGCAACTTACCTGCAGATGCGTACCACCGGTGATCTGCATGTGCGTGTGCGTAAAGCCACCACTATCACTGCTCTGCTGACATTTGTTCTGTTCGCGGCAGCCGGTGCATGGCTGATGTGGGGCGGTATCGATGGTTTCCGTGTTGTCTCTGACATCGACCATTTCGGTGCGTCTAACCCGGTTAATAAAGAAGTGGTACAGGAAGCAGGCGCATGGATGGCAAACTTCAATGCCTATCCAATCCTGTGGATCCTGCCTGCTATTGGTCTGGCATCACCTCTGCTGGTCGTGATGTTCACTGCAATGGATAAAGGCGCGTGGGCATTCCTGTTCACCTCGCTGACTATTGCCGGTGTGATCCTGACCTGTGGTACAGCAATGTTCCCGTTCATTATGCCTTCAAGCATCGACCCGAACGTTAGTCTGACCATGTGGGATGCAACCTCCAGCCTGTTTACTCTCCAGGTGATGACGGTTGTTGCGATTATCTTTGTACCACTTGTTCTCCTGTACACCATCTGGTGTTACGTGAAGATGGCAGGACGTATTGATAAGTCCTTCATCGAAGAGAACAAACATACATTGTACTAAGGAGCAGACGAATATGTGGTATTTTGCATGGATCCTCGGAACGCTCCTGG