Homologs in group_1515

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09795 FBDBKF_09795 90.5 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_04595 EHELCC_04595 90.5 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
NLDBIP_04595 NLDBIP_04595 90.5 Morganella morganii S4 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_14035 LHKJJB_14035 90.5 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
HKOGLL_12500 HKOGLL_12500 90.5 Morganella morganii S5 cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS02825 PMI_RS02825 75.7 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_1515

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1515

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABK2 0.0 541 68 1 380 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 0.0 541 68 1 380 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 0.0 541 68 1 380 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P45020 1.66e-160 458 60 1 380 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P26458 5.06e-151 434 55 2 380 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P94365 3.29e-56 190 31 6 367 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00550
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 119727 - 120869 (strand: 1)
Length 1143 (nucleotides) / 380 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1515
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MFDYEILRFVWWILIGVLLIGFTVTDGFDMGVGILLPIISKGDTERRIMINTLAPHWEGNQVWLVTAGGALFAAWPMVYAAAFSGFYIAMILVLAALFFRPVGFDYRSKLESPKWRGMWDWGIFIGSFVPSLVIGVAFGNLLLGVPVEVNSNLQVSYAGSFFGLLNPYGLLAGLISLMMIVAHGGTYLQMRTTGELHLRARKATTITALLTFVLFAVAGAWLMWGGIEGFRVVSDLDHFGPSNPVTKEVVQEAGAWMANFTAHPILWILPAVGLVSPLLVVLFTRLDKGAFAFLFSALTIAGVILTCGTAMFPFIMPSSIDPNVSLTMWDATSSLLTLQVMTVVAIIFVPTVLLYTIWCYVKMAGRMDKSFIEDNKHSLY

Flanking regions ( +/- flanking 50bp)

CACTTTGAAACGTCACCGGCACAAGACGCTAAGTAAACAGGAGCCCACTTATGTTTGATTATGAAATATTACGGTTTGTATGGTGGATACTGATCGGCGTTCTGCTGATTGGCTTCACTGTGACTGATGGTTTTGATATGGGTGTGGGTATTTTGCTGCCGATTATCAGCAAAGGTGATACAGAACGTCGTATCATGATTAATACCTTAGCGCCGCACTGGGAGGGCAACCAGGTATGGTTGGTCACCGCAGGTGGTGCACTGTTTGCTGCATGGCCGATGGTCTACGCTGCTGCATTCTCAGGCTTCTATATCGCAATGATTCTGGTCCTGGCGGCATTATTCTTCCGCCCGGTCGGTTTTGACTATCGTTCAAAACTGGAATCACCAAAATGGCGCGGTATGTGGGACTGGGGTATTTTTATCGGCAGTTTCGTTCCGTCACTAGTCATCGGTGTGGCATTCGGTAACCTGTTACTGGGTGTGCCGGTTGAAGTGAACTCGAATCTGCAGGTTTCTTATGCAGGCAGTTTCTTCGGTCTTCTGAACCCGTATGGTCTGTTAGCCGGCTTAATCAGTCTGATGATGATTGTGGCGCACGGCGGGACTTACCTGCAGATGCGTACTACCGGTGAATTACACCTGCGTGCGCGCAAAGCAACCACCATTACCGCATTGCTGACATTTGTTCTGTTCGCTGTGGCCGGTGCGTGGCTGATGTGGGGTGGTATCGAAGGTTTCCGTGTCGTATCTGACCTGGATCATTTCGGTCCTTCCAACCCGGTGACGAAAGAAGTGGTTCAGGAAGCGGGCGCATGGATGGCAAACTTTACTGCCCATCCAATCCTGTGGATCCTGCCTGCTGTCGGCCTGGTGTCTCCGCTGCTGGTGGTTCTGTTCACCCGTCTGGATAAAGGTGCGTTTGCATTCCTGTTCTCTGCACTGACTATTGCCGGGGTGATCCTGACCTGTGGTACAGCGATGTTCCCGTTCATCATGCCTTCAAGCATTGACCCGAACGTCAGTCTGACCATGTGGGATGCAACATCCAGTCTGCTTACCCTTCAGGTAATGACAGTTGTTGCGATTATCTTTGTACCAACCGTTCTTCTGTACACTATCTGGTGTTACGTGAAGATGGCGGGTCGTATGGATAAATCCTTCATCGAAGACAACAAACATTCACTGTACTAAGGAGCAGACGCATATGTGGTATTTTGCATGGATCCTCGGAACGCTCCTGG