Homologs in group_2000

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15045 FBDBKF_15045 49.1 Morganella morganii S1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
EHELCC_11200 EHELCC_11200 49.1 Morganella morganii S2 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
NLDBIP_11545 NLDBIP_11545 49.1 Morganella morganii S4 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
LHKJJB_11405 LHKJJB_11405 49.1 Morganella morganii S3 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
HKOGLL_10015 HKOGLL_10015 49.1 Morganella morganii S5 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
F4V73_RS12405 F4V73_RS12405 50.3 Morganella psychrotolerans - PilT/PilU family type 4a pilus ATPase

Distribution of the homologs in the orthogroup group_2000

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2000

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52052 6.49e-108 321 51 2 331 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)
P24559 1.69e-85 264 41 2 332 1 pilT Type IV pilus retractation ATPase PilT Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q06581 4.38e-73 233 41 3 307 3 pilT Twitching motility protein Neisseria gonorrhoeae
G3XCX3 9.57e-68 220 38 3 319 1 pilU Type IV pilus ATPase PilU Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q00512 9.48e-28 116 34 9 278 1 xcpR Type II secretion system protein E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45759 1.58e-27 115 36 8 273 1 gspE Putative type II secretion system protein E Escherichia coli (strain K12)
Q1D098 4.27e-27 115 28 13 378 1 pilB Type IV pilus assembly ATPase PilB Myxococcus xanthus (strain DK1622)
P45792 1.25e-26 113 28 14 378 3 tapB Type IV pilus assembly protein TapB Aeromonas hydrophila
Q9I5N9 1.29e-26 112 30 11 348 2 hxcR Type II secretion system protein HxcR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q01566 5.61e-26 111 33 9 282 3 outE Type II secretion system protein E Dickeya dadantii (strain 3937)
P31741 1.78e-25 110 33 7 248 3 exeE Type II secretion system protein E Aeromonas hydrophila
P31702 4.97e-25 108 33 9 282 1 outE Type II secretion system protein E Dickeya chrysanthemi
P31703 5.42e-25 108 33 9 278 3 outE Type II secretion system protein E Pectobacterium carotovorum subsp. carotovorum
P37093 5.54e-25 108 35 10 278 1 epsE Type II secretion system ATPase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q6FF45 1.06e-24 108 30 8 278 1 pilB Type IV pilus assembly ATPase PilB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P44622 5.3e-24 105 34 14 279 3 hofB Protein transport protein HofB homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P25953 2.08e-23 102 28 13 324 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
P15645 2.1e-23 103 32 9 279 3 pulE Type II secretion system protein E Klebsiella pneumoniae
P22608 6.2e-23 102 31 9 279 1 pilB Type IV pilus assembly ATPase PilB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P29480 7.35e-22 99 35 5 156 1 tcpT Toxin coregulated pilus biosynthesis protein T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q6FA79 1.16e-21 99 29 11 320 3 tfpB Type IV pilus assembly ATPase TfpB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q9K919 1.51e-21 97 33 9 256 3 comGA Competence protein ComGA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P36645 1.98e-21 98 29 14 367 3 hofB Protein transport protein HofB homolog Escherichia coli (strain K12)
P37094 2.02e-21 98 35 5 195 3 pilF Type IV pilus assembly protein PilF Neisseria gonorrhoeae
P31742 5.43e-21 97 29 9 279 1 xpsE Type II secretion system protein E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q5SLC9 2.32e-19 92 32 11 271 1 pilB Type IV pilus assembly ATPase PilB Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q8DN86 2.01e-10 64 29 4 157 2 comGA Competence protein ComGA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q4J9L0 1.27e-09 62 32 5 140 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q58310 6.8e-08 57 31 5 120 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P9WMT3 2.38e-05 49 27 9 187 2 Rv3659c Putative conjugal transfer protein Rv3659c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMT2 2.38e-05 49 27 9 187 3 MT3759 Putative conjugal transfer protein MT3759 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q6F054 7.07e-05 48 28 5 123 3 pXO2-25 Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 Bacillus anthracis
Q58683 0.000287 45 29 4 119 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01610
Feature type CDS
Gene -
Product PilT/PilU family type 4a pilus ATPase
Location 386863 - 387882 (strand: 1)
Length 1020 (nucleotides) / 339 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2000
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2805 Cell motility (N)
Extracellular structures (W)		 NW Type IV pilus assembly protein PilT, pilus retraction ATPase

Protein Sequence

MNMEKLIIYSVKHNASDLHLCCGDVPRLRINGVLYQQNQCKPITSDTLLKWITPYLTTAQLQFFGKEGQVDTAITLAEGQRLRVNLFRQQLGISAVLRVINSQLPTLTSLRVPKSITALLDNVSNGLILVTGATGSGKSSTLAAMIDYLNQHKRQHILTLEAPIEFIYTNKQSIIQQREIGRDVQNIASAIKAALRQDPDVIMLGELRDLESIKMALIAAETGHLVLATLHTQGVVQTLERVTNVFSSNERQWISAQLAGSLKAIISQQLVPATQGGRVALFEVMYMTQGIAHLIREGKYHQVTTLMQTGFEYGMQTFTLSRQQRQYEGLLNEHINEEN

Flanking regions ( +/- flanking 50bp)

TTGACGAGATTCTGTTTAATAGTATTCATGGCAACTCAGGAGATAATAAGATGAATATGGAAAAATTAATTATATATAGTGTAAAGCATAATGCTTCCGATCTGCACCTTTGTTGTGGCGATGTGCCACGATTACGGATCAATGGCGTACTTTATCAACAAAATCAATGTAAACCTATTACTTCTGATACGCTACTCAAATGGATAACACCTTATCTGACCACAGCGCAATTGCAATTTTTTGGTAAGGAGGGGCAAGTTGATACGGCGATAACTCTTGCTGAGGGGCAGCGCTTACGAGTGAATTTATTTCGCCAACAATTAGGGATATCCGCAGTACTAAGAGTGATAAATTCACAGCTCCCGACATTAACATCACTACGCGTACCAAAATCAATCACTGCATTATTAGATAATGTTTCTAATGGACTTATTTTAGTGACGGGAGCAACAGGGAGTGGTAAATCATCCACATTAGCAGCGATGATTGATTATCTCAATCAGCATAAGCGTCAGCATATTCTTACTTTGGAAGCGCCAATAGAGTTTATTTACACCAATAAGCAAAGCATTATCCAACAACGTGAAATAGGGCGCGATGTACAAAATATAGCGAGTGCAATAAAAGCCGCATTACGTCAAGATCCCGATGTAATTATGCTAGGGGAATTAAGAGATCTAGAAAGTATTAAAATGGCATTAATTGCGGCTGAAACGGGGCATTTAGTACTAGCAACATTACATACGCAAGGCGTTGTTCAAACGTTAGAGCGTGTCACTAATGTATTTTCATCCAATGAACGACAATGGATCTCGGCACAATTAGCTGGAAGCTTAAAAGCAATTATTTCTCAGCAATTGGTTCCAGCAACACAAGGCGGGCGTGTTGCCCTGTTTGAAGTGATGTATATGACGCAGGGGATTGCACATCTGATCAGAGAAGGGAAATATCATCAAGTGACGACATTAATGCAAACTGGGTTTGAATATGGCATGCAAACCTTCACTTTAAGTCGCCAACAACGTCAATATGAAGGTTTGCTCAATGAGCACATCAATGAAGAAAATTAATACTGCCGTTCAAACCAGCTTTCTAAAATAATAACGGCAGAAGTTGCATC