Homologs in group_2000

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15045 FBDBKF_15045 100.0 Morganella morganii S1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
EHELCC_11200 EHELCC_11200 100.0 Morganella morganii S2 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
LHKJJB_11405 LHKJJB_11405 100.0 Morganella morganii S3 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
HKOGLL_10015 HKOGLL_10015 100.0 Morganella morganii S5 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
F4V73_RS12405 F4V73_RS12405 83.8 Morganella psychrotolerans - PilT/PilU family type 4a pilus ATPase
PMI_RS01610 PMI_RS01610 49.1 Proteus mirabilis HI4320 - PilT/PilU family type 4a pilus ATPase

Distribution of the homologs in the orthogroup group_2000

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2000

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52052 3.05e-102 306 51 3 331 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)
P24559 1.44e-79 249 41 3 334 1 pilT Type IV pilus retractation ATPase PilT Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q06581 3.12e-74 236 42 4 312 3 pilT Twitching motility protein Neisseria gonorrhoeae
G3XCX3 1.04e-57 194 33 4 335 1 pilU Type IV pilus ATPase PilU Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P25953 7.72e-30 120 41 6 172 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
P44622 5.42e-27 114 45 7 169 3 hofB Protein transport protein HofB homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P15645 1.7e-26 112 34 11 284 3 pulE Type II secretion system protein E Klebsiella pneumoniae
P45759 1.8e-26 112 34 10 281 1 gspE Putative type II secretion system protein E Escherichia coli (strain K12)
Q00512 2.02e-26 112 34 10 279 1 xcpR Type II secretion system protein E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31703 2.6e-25 109 46 5 147 3 outE Type II secretion system protein E Pectobacterium carotovorum subsp. carotovorum
P37093 4.74e-25 108 45 5 153 1 epsE Type II secretion system ATPase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P31742 6.17e-25 108 34 12 284 1 xpsE Type II secretion system protein E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q01566 6.84e-25 108 46 5 147 3 outE Type II secretion system protein E Dickeya dadantii (strain 3937)
Q9K919 9.94e-25 105 36 6 210 3 comGA Competence protein ComGA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P31741 1.06e-24 107 34 7 253 3 exeE Type II secretion system protein E Aeromonas hydrophila
Q9I5N9 2.43e-24 106 34 11 281 2 hxcR Type II secretion system protein HxcR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P36645 7.14e-24 105 32 13 364 3 hofB Protein transport protein HofB homolog Escherichia coli (strain K12)
P31702 8e-24 105 45 5 147 1 outE Type II secretion system protein E Dickeya chrysanthemi
Q5SLC9 1.2e-22 102 34 12 272 1 pilB Type IV pilus assembly ATPase PilB Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q6FA79 2.27e-22 101 33 12 288 3 tfpB Type IV pilus assembly ATPase TfpB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q1D098 1.07e-20 96 42 4 145 1 pilB Type IV pilus assembly ATPase PilB Myxococcus xanthus (strain DK1622)
P22608 5.35e-20 94 41 4 153 1 pilB Type IV pilus assembly ATPase PilB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P29480 1.74e-19 92 26 13 282 1 tcpT Toxin coregulated pilus biosynthesis protein T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45792 3.1e-18 89 38 4 154 3 tapB Type IV pilus assembly protein TapB Aeromonas hydrophila
Q6FF45 3.43e-18 89 30 8 234 1 pilB Type IV pilus assembly ATPase PilB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P37094 4.48e-17 85 41 3 126 3 pilF Type IV pilus assembly protein PilF Neisseria gonorrhoeae
Q8DN86 2.33e-10 64 32 5 155 2 comGA Competence protein ComGA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q4J9L0 5.69e-10 63 33 3 118 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q58683 6.44e-10 62 34 3 120 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58310 8.51e-09 60 37 5 120 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9RNC7 6.89e-06 50 35 5 120 1 virB11 Type IV secretion system protein VirB11 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
P0A3F8 1.26e-05 50 34 5 119 3 virB11 Protein VirB11 Rhizobium radiobacter
P0A3F9 1.26e-05 50 34 5 119 3 virB11 Protein VirB11 Agrobacterium tumefaciens (strain 15955)
P54907 1.32e-05 50 28 6 153 3 trbB Conjugal transfer protein TrbB Rhizobium radiobacter
Q6F054 2.85e-05 49 30 5 125 3 pXO2-25 Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 Bacillus anthracis
P07169 4.88e-05 48 32 5 119 3 virB11 Protein VirB11 Agrobacterium fabrum (strain C58 / ATCC 33970)
P55395 0.000184 46 30 4 126 3 trbB Probable conjugal transfer protein TrbB Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P9WMT3 0.000192 46 30 8 168 2 Rv3659c Putative conjugal transfer protein Rv3659c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMT2 0.000192 46 30 8 168 3 MT3759 Putative conjugal transfer protein MT3759 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_11545
Feature type CDS
Gene pilT
Product Type IV pilus assembly protein PilT, pilus retraction ATPase
Location 64623 - 65645 (strand: -1)
Length 1023 (nucleotides) / 340 (amino acids)

Contig

Accession ZDB_526
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2000
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2805 Cell motility (N)
Extracellular structures (W)		 NW Type IV pilus assembly protein PilT, pilus retraction ATPase

Protein Sequence

MNMDNLIALSVKHNASDLHLCVGQVPMLRVDGELFSQTHCAAVTDDALRGWVKTILDQANYHRLMTKGQADLALFIRDQPLRVNIFMAGGLLNAALRLISPVVPSLEDILAPPVFAGLLSKTQSGLILVTGATGSGKSSTLAALLSYINQHFRRHVITLEDPVEFRHRSRQSLIRQREIGRDCEDYQQGLTAALRQDPDVIMLGELRDEAAIRLALTAAETGHLVLSTLHTRGAIAAIERLTDVFSGAEKNRVCSQLAGSLVAVLSQHLVAKQGGGRCALFDVLINTPAVASLIRDNKAYQIASHQQSGSQSGMMTEEQCLQWRRGRGEIAGEAGAVPAW

Flanking regions ( +/- flanking 50bp)

TCTGTCAGATTGTCTTTTATTGGTTTCATGATGATCCGGGAGATAACCTAATGAATATGGATAATTTAATCGCCCTTAGTGTAAAGCATAATGCATCCGATCTGCACCTTTGTGTTGGTCAGGTGCCGATGTTACGGGTGGATGGAGAGCTTTTTTCGCAGACACACTGTGCGGCGGTAACCGATGACGCACTGCGCGGCTGGGTAAAGACGATCCTCGACCAGGCAAATTACCACAGATTGATGACAAAAGGGCAGGCGGATCTTGCGTTGTTTATCCGCGATCAACCTTTGCGGGTGAATATTTTTATGGCGGGGGGATTGCTGAACGCCGCACTGCGGCTGATAAGCCCGGTGGTTCCCTCTCTGGAGGATATCCTGGCACCGCCGGTGTTTGCCGGGCTGCTGTCAAAAACGCAAAGCGGCCTGATTCTGGTCACCGGGGCGACCGGCAGCGGAAAATCAAGCACGCTGGCGGCGCTGCTCAGTTATATCAATCAGCATTTCCGGCGGCATGTGATTACCCTCGAGGACCCGGTGGAGTTCCGTCACCGCAGCAGGCAGTCGCTGATCCGCCAGCGGGAAATCGGCCGTGATTGTGAGGATTATCAGCAGGGGCTGACAGCCGCGCTGAGACAGGATCCGGATGTGATTATGCTGGGGGAATTGCGGGATGAGGCGGCTATCCGGCTTGCCCTGACGGCGGCGGAAACCGGGCATCTGGTGCTGAGTACGCTCCACACCAGAGGCGCGATTGCGGCGATAGAGCGGTTGACGGATGTGTTCAGCGGTGCGGAGAAAAACCGTGTGTGCAGCCAGCTGGCAGGCAGTCTGGTGGCCGTGCTGAGCCAGCATCTGGTGGCTAAACAGGGGGGCGGACGCTGTGCACTGTTTGATGTGCTGATCAATACCCCGGCGGTGGCGAGCCTTATCCGTGATAATAAAGCGTATCAGATTGCCTCTCACCAGCAGTCAGGCTCACAGTCCGGGATGATGACGGAGGAGCAGTGCCTGCAATGGCGGCGCGGCAGAGGAGAGATAGCCGGGGAGGCGGGCGCGGTACCGGCATGGTAAACAGTACCGCGCGCCGGGTGCGGGATAGTCAGCCGTAAAGCTGTTCGAAC