Homologs in group_2000

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15045 FBDBKF_15045 83.8 Morganella morganii S1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
EHELCC_11200 EHELCC_11200 83.8 Morganella morganii S2 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
NLDBIP_11545 NLDBIP_11545 83.8 Morganella morganii S4 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
LHKJJB_11405 LHKJJB_11405 83.8 Morganella morganii S3 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
HKOGLL_10015 HKOGLL_10015 83.8 Morganella morganii S5 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
PMI_RS01610 PMI_RS01610 50.3 Proteus mirabilis HI4320 - PilT/PilU family type 4a pilus ATPase

Distribution of the homologs in the orthogroup group_2000

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2000

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52052 2.13e-101 304 51 3 331 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)
P24559 5.4e-83 258 42 3 329 1 pilT Type IV pilus retractation ATPase PilT Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q06581 2.38e-70 226 42 4 299 3 pilT Twitching motility protein Neisseria gonorrhoeae
G3XCX3 1.12e-54 186 32 4 332 1 pilU Type IV pilus ATPase PilU Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P25953 6.6e-28 114 38 4 171 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
P45759 1.13e-27 116 46 5 149 1 gspE Putative type II secretion system protein E Escherichia coli (strain K12)
P37093 1.16e-27 116 35 10 280 1 epsE Type II secretion system ATPase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q00512 2.12e-27 115 32 9 279 1 xcpR Type II secretion system protein E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P44622 2.64e-27 114 46 5 149 3 hofB Protein transport protein HofB homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P15645 3.86e-27 114 46 5 149 3 pulE Type II secretion system protein E Klebsiella pneumoniae
P31703 6.09e-27 114 46 5 147 3 outE Type II secretion system protein E Pectobacterium carotovorum subsp. carotovorum
P31742 7.1e-27 114 43 5 160 1 xpsE Type II secretion system protein E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q9I5N9 9.18e-27 113 35 11 281 2 hxcR Type II secretion system protein HxcR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q01566 1.02e-26 113 46 5 147 3 outE Type II secretion system protein E Dickeya dadantii (strain 3937)
P31702 1.57e-25 110 46 5 147 1 outE Type II secretion system protein E Dickeya chrysanthemi
Q5SLC9 1.82e-25 110 34 12 272 1 pilB Type IV pilus assembly ATPase PilB Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q9K919 4.38e-25 107 30 14 348 3 comGA Competence protein ComGA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P31741 5.16e-25 108 32 9 254 3 exeE Type II secretion system protein E Aeromonas hydrophila
P36645 4.14e-23 102 32 16 364 3 hofB Protein transport protein HofB homolog Escherichia coli (strain K12)
Q1D098 5.52e-23 103 43 4 145 1 pilB Type IV pilus assembly ATPase PilB Myxococcus xanthus (strain DK1622)
P22608 7.05e-23 102 48 3 125 1 pilB Type IV pilus assembly ATPase PilB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P29480 1.09e-22 102 29 14 286 1 tcpT Toxin coregulated pilus biosynthesis protein T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q6FA79 1.8e-21 99 29 14 329 3 tfpB Type IV pilus assembly ATPase TfpB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P45792 1.1e-20 96 39 4 149 3 tapB Type IV pilus assembly protein TapB Aeromonas hydrophila
Q6FF45 1.47e-20 95 41 4 132 1 pilB Type IV pilus assembly ATPase PilB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P37094 6.07e-20 94 43 3 121 3 pilF Type IV pilus assembly protein PilF Neisseria gonorrhoeae
Q8DN86 5.94e-12 68 33 4 152 2 comGA Competence protein ComGA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q4J9L0 8.3e-10 63 34 3 118 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q58683 6.63e-09 59 33 4 129 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58310 5.18e-08 58 35 5 120 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P54907 3.43e-06 51 28 6 153 3 trbB Conjugal transfer protein TrbB Rhizobium radiobacter
P55395 5.19e-06 51 31 4 117 3 trbB Probable conjugal transfer protein TrbB Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P07169 6.54e-06 50 34 5 119 3 virB11 Protein VirB11 Agrobacterium fabrum (strain C58 / ATCC 33970)
P9WMT3 1.43e-05 50 30 8 179 2 Rv3659c Putative conjugal transfer protein Rv3659c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMT2 1.43e-05 50 30 8 179 3 MT3759 Putative conjugal transfer protein MT3759 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A3F8 2.92e-05 48 32 5 119 3 virB11 Protein VirB11 Rhizobium radiobacter
P0A3F9 2.92e-05 48 32 5 119 3 virB11 Protein VirB11 Agrobacterium tumefaciens (strain 15955)
Q7VSX3 0.000231 46 37 6 122 1 ptlH Type IV secretion system protein PtlH Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q7W2T7 0.000231 46 37 6 122 3 ptlH Type IV secretion system protein PtlH homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q7WDT5 0.000237 46 36 5 122 3 ptlH Type IV secretion system protein PtlH homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12405
Feature type CDS
Gene -
Product PilT/PilU family type 4a pilus ATPase
Location 65305 - 66336 (strand: -1)
Length 1032 (nucleotides) / 343 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2000
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2805 Cell motility (N)
Extracellular structures (W)		 NW Type IV pilus assembly protein PilT, pilus retraction ATPase

Protein Sequence

MNMDNLIGLSVKHNASDLHLCVNQVPVLRVDGQLFSQTHCAVVTEDALHCWVKTILDEANYHKLMTKGQADLALFIRDQPLRANIFQAGGHLNAAVRLISPCVPTLEDISAPPVFADLITKTNSGLILVTGATGSGKSSTLAALINHLNQHCRRHIITLEDPVEFRHTGRQSLIRQREIGRDCADYQQALKAVLRQDPDVILLGELRDEATIRLALTAAETGHLVLSTLHTRGAVAAIERLTDVFSGTEKARVCSQLAGSLVAVLSQHLIAKQGGGRCALFDVLINTPAVASLIRDDKSYQIATHQQTGAQLGMMTEEQCLQWRQSRGDLPCGADTIPAWSAG

Flanking regions ( +/- flanking 50bp)

TCTGTCAGATTGTCTTTAATTAGTTTCATGATGATCCGGGAGATAACCTAATGAATATGGATAATTTAATCGGCCTTAGTGTAAAGCATAATGCATCCGATCTGCACCTTTGTGTGAATCAGGTGCCGGTTTTACGGGTTGACGGTCAGCTTTTTTCACAAACACACTGCGCGGTTGTGACAGAAGATGCATTACATTGCTGGGTAAAGACGATCCTCGACGAGGCAAATTACCATAAATTGATGACAAAGGGGCAGGCGGATCTTGCGTTGTTTATCCGTGATCAACCTTTACGGGCGAATATTTTTCAGGCGGGCGGGCATCTCAATGCTGCTGTCCGCCTGATTAGCCCTTGCGTTCCGACACTGGAGGATATCAGTGCGCCGCCGGTATTTGCCGACCTTATCACTAAGACAAACAGCGGGTTGATTTTAGTCACAGGTGCCACCGGCAGCGGAAAATCGAGCACACTGGCGGCACTTATCAATCACCTTAACCAGCACTGCCGACGGCATATTATTACCCTGGAGGATCCGGTTGAATTCCGCCATACCGGCAGGCAATCGCTTATCCGTCAGCGGGAAATTGGCAGGGATTGTGCGGATTATCAGCAGGCACTGAAAGCCGTACTGCGTCAGGACCCGGATGTGATTTTGCTGGGGGAACTGCGTGATGAAGCCACTATCCGCCTGGCGCTGACGGCGGCGGAAACCGGGCATCTGGTATTGAGCACATTGCATACCCGGGGTGCAGTCGCTGCCATTGAGCGGTTGACTGATGTTTTCAGCGGCACGGAGAAGGCGCGGGTGTGCAGTCAGTTGGCGGGCAGTCTGGTGGCGGTGCTGAGTCAGCATCTGATTGCAAAACAAGGCGGAGGGCGTTGTGCGCTGTTTGATGTGCTGATTAATACCCCGGCGGTAGCCAGTCTGATCCGCGATGATAAATCATATCAGATTGCCACCCATCAGCAGACGGGCGCACAACTGGGAATGATGACAGAAGAGCAATGTCTGCAATGGCGGCAGAGCCGGGGCGACCTGCCCTGCGGGGCAGATACCATACCGGCGTGGAGTGCGGGATAACGCGCGCAGAGGGTGGGTTTACCCGCCGTAAAGCTGTTCAAACCAGCTTT