Homologs in group_129

Help

10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16720 FBDBKF_16720 60.4 Morganella morganii S1 vgrG VgrG protein
EHELCC_10740 EHELCC_10740 60.4 Morganella morganii S2 vgrG VgrG protein
NLDBIP_11085 NLDBIP_11085 60.4 Morganella morganii S4 vgrG VgrG protein
LHKJJB_10270 LHKJJB_10270 60.4 Morganella morganii S3 vgrG VgrG protein
HKOGLL_16435 HKOGLL_16435 60.4 Morganella morganii S5 vgrG VgrG protein
F4V73_RS05135 F4V73_RS05135 67.1 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
PMI_RS03695 PMI_RS03695 58.7 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS05425 PMI_RS05425 61.1 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS06420 PMI_RS06420 61.5 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS14790 PMI_RS14790 62.7 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG

Distribution of the homologs in the orthogroup group_129

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_129

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q0PZH5 2.58e-155 467 40 10 615 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
K7WKL8 4.09e-155 466 41 10 615 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
Q0PZF7 2.07e-153 462 40 10 615 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
A0KJB0 3.16e-149 453 39 11 627 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
E0SAL0 5.57e-129 397 38 9 597 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
E0SIS4 2.5e-128 395 38 9 597 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
Q9KNE7 1.04e-124 388 37 10 617 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KS45 2.28e-121 391 37 12 625 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H3AIG7 6.42e-118 381 37 13 625 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KN42 1.43e-113 367 35 7 615 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9HYC3 8.77e-98 321 32 13 619 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HU93 9.82e-98 320 32 13 625 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 4.14e-90 301 36 8 487 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 8.25e-89 301 36 8 487 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I741 2.85e-82 275 30 12 613 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 1.39e-80 273 29 16 677 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 5.86e-78 266 28 11 605 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01000
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 245952 - 247940 (strand: 1)
Length 1989 (nucleotides) / 662 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_129
Orthogroup size 11
N. genomes 7

Actions

Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MLEQGLLKTGLVFTCQVAGLADDTFQVTQFDLNEGLSELFTLTIQVVSTQSDIDFSYYLGGASSLTVRRNGKKIRTVQGLLSSAEQSNTDGIKTWYQLEIRPEMWVMTLNQDSRIFQHKTVPEILKHLLDEAHIKYDNRLYQPELHQPRHYVTQKRESAYDFWCRLAFEEGINFWFEEGPKLFYSDNHLGMTAGITLTYNPQSETDITDSTATKWRYIERLCSDVRIDKDYNQIRPSYPLSQQTTGKNHQQHPIFESYGRFQEDAQGQPFNQLRYEQSQNHRQTGYAQTNCFALMPGKIFTLTNHPCTRMNECWQVVSVTHHGVQPLGDNSEGQGTQLSNHVTFIPSMQEWRPPFHYKPLADGDELATVVGPDGEEIYTNEQGAVKVYFHWDRRGTPDHSGSCWLRVAQGWSGNGFGFIAIPRVGQEVIVSYLNGDIDRPIITGCTYNGRNTPPLDLPKEKTKTTFRSKTHKGTGFNELRFEDAGGREEVYLHAQNDLNIHVQHDSHWHTEHDVRQRIDNQRVTEIAGDEHFILKGTQKSLIEGNVSLQIKGAKHCKVNDALIAESGKETHFKSGGKIILEAVSEITLKVGSSFIRLTPNAIFTSGNLDIGSSGPGIGQDPNIQLPDGVTPFEQPLFAIKKYCVLTANEAGSLLIKPAKDEN

Flanking regions ( +/- flanking 50bp)

CAGCAGCAGAGCAACGTGCTCGTATACAAAGACATGTCGAACTTCTTGATATGTTAGAACAAGGGTTACTGAAAACGGGTTTAGTTTTTACTTGCCAAGTAGCTGGATTAGCTGACGATACTTTTCAAGTCACTCAATTTGATTTAAACGAAGGACTTTCTGAGCTATTTACACTCACTATTCAAGTCGTGAGTACTCAAAGTGATATTGATTTTTCATATTATTTGGGAGGGGCATCATCACTTACAGTAAGAAGAAACGGTAAAAAAATTCGTACGGTACAAGGTCTATTATCGAGTGCAGAACAAAGTAATACTGATGGTATTAAAACTTGGTATCAGTTAGAGATCCGTCCTGAAATGTGGGTGATGACACTTAATCAAGATAGTCGCATTTTTCAGCATAAAACAGTACCTGAAATCTTAAAACATTTACTTGATGAAGCACATATCAAATATGATAACAGGCTCTACCAACCTGAACTTCATCAACCTCGTCATTATGTTACTCAAAAACGTGAATCAGCTTATGATTTTTGGTGTCGTTTAGCTTTTGAAGAGGGAATTAACTTTTGGTTTGAGGAAGGCCCGAAGCTTTTTTACAGCGATAATCATTTAGGCATGACGGCGGGGATCACTTTAACTTATAACCCACAGTCTGAAACAGATATTACCGACAGTACTGCAACGAAATGGCGTTATATAGAACGTTTATGCAGTGATGTCCGTATAGATAAAGACTATAACCAAATACGTCCTTCCTACCCCTTATCGCAACAAACAACAGGGAAAAATCATCAACAACACCCTATATTTGAAAGTTATGGTCGCTTTCAAGAAGATGCACAGGGCCAGCCATTTAATCAACTGCGTTATGAACAATCTCAAAACCATCGTCAAACGGGCTATGCACAAACTAATTGTTTTGCTCTTATGCCTGGTAAGATATTTACCTTAACTAATCATCCGTGTACAAGAATGAATGAATGTTGGCAAGTAGTTAGCGTTACTCATCATGGTGTACAGCCTTTAGGAGATAACAGTGAAGGACAAGGCACTCAACTTTCTAATCACGTTACCTTTATTCCGAGTATGCAAGAGTGGCGACCACCATTTCATTATAAACCATTAGCTGATGGTGATGAATTAGCTACAGTTGTTGGTCCAGATGGAGAAGAAATTTATACCAATGAACAAGGTGCTGTAAAAGTTTATTTTCATTGGGATAGAAGAGGAACACCTGATCATAGTGGATCGTGCTGGCTTCGGGTTGCGCAGGGATGGAGTGGCAATGGTTTTGGCTTTATAGCTATCCCGCGTGTAGGGCAGGAAGTGATTGTTTCCTATTTAAATGGCGATATTGACAGACCTATTATTACGGGATGTACTTACAATGGTCGTAATACACCACCGCTTGATTTACCGAAAGAAAAAACCAAAACCACATTTCGTAGTAAAACTCATAAAGGTACTGGATTTAATGAACTAAGATTTGAAGATGCGGGTGGCCGTGAAGAAGTGTATTTGCATGCACAAAATGATTTAAATATTCATGTGCAACATGATAGTCATTGGCATACCGAACATGATGTTAGGCAACGGATAGATAATCAAAGAGTAACTGAAATAGCTGGTGATGAGCATTTTATTTTGAAGGGAACACAAAAATCATTAATTGAAGGTAATGTTTCATTACAAATCAAAGGCGCGAAGCATTGCAAAGTAAATGATGCATTAATAGCTGAAAGCGGTAAGGAAACTCATTTTAAAAGTGGTGGAAAAATTATTCTTGAAGCTGTAAGCGAAATTACCTTAAAAGTAGGAAGTAGTTTTATCCGCCTTACCCCAAATGCAATCTTTACTTCTGGAAATTTAGATATTGGATCAAGTGGACCAGGAATAGGTCAAGATCCTAACATTCAACTACCTGATGGTGTCACTCCTTTTGAACAACCCCTTTTTGCGATTAAAAAATATTGTGTTTTAACAGCAAATGAAGCAGGTAGTTTATTAATAAAGCCAGCTAAGGACGAAAATTAATGATACCTTTAACATGGATGCAATGGAGTGATAATATTTCGCAAGGAGAT