Homologs in group_311

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09260 FBDBKF_09260 27.1 Morganella morganii S1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
EHELCC_10150 EHELCC_10150 27.1 Morganella morganii S2 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
NLDBIP_10495 NLDBIP_10495 27.1 Morganella morganii S4 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
LHKJJB_10860 LHKJJB_10860 27.1 Morganella morganii S3 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
HKOGLL_13920 HKOGLL_13920 27.1 Morganella morganii S5 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
F4V73_RS10705 F4V73_RS10705 27.7 Morganella psychrotolerans - LemA family protein
PMI_RS13030 PMI_RS13030 26.6 Proteus mirabilis HI4320 - LemA family protein

Distribution of the homologs in the orthogroup group_311

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_311

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A8AVK0 1.29e-18 82 33 2 142 2 lemA Protein LemA Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
Q58971 1.58e-15 73 31 3 153 3 lemA Protein LemA Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P43054 0.00034 43 25 3 132 3 lemA Protein LemA Metamycoplasma hominis (strain ATCC 23114 / DSM 25592 / NBRC 14850 / NCTC 10111 / PG21)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00810
Feature type CDS
Gene -
Product LemA family protein
Location 204061 - 204621 (strand: -1)
Length 561 (nucleotides) / 186 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_311
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF04011 LemA family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1704 Cell wall/membrane/envelope biogenesis (M) M Magnetosome formation protein MamQ, lipoprotein antigen LemA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03744 LemA protein - -

Protein Sequence

MTGLIITIALLGLIFYYYNRIISMREAVISSETEISVQLDRRGKVFDSLLATVKKYLSHEADVFTKITELRAKTQSSNNQEAKAAEDELSKIVSSGAINVAVENYPELKSDTIMANLQEEIVSTENKLSFAKRGYNRTLEQYRAFIASIPAVFIVKIFPSLVINKEYWRLDETAIKSEEARRINFD

Flanking regions ( +/- flanking 50bp)

AATGAGTTAGCTAAATTCCCTGTTTATTATTAGAAAAGAGAGCGCTTCACATGACTGGATTAATTATTACCATCGCGTTATTGGGTCTTATTTTTTATTATTACAACCGTATTATCTCTATGCGTGAAGCGGTTATCTCAAGTGAAACAGAAATATCGGTACAACTCGACCGTCGTGGTAAAGTGTTTGATAGCTTATTAGCTACAGTAAAAAAATATCTTAGTCATGAAGCCGATGTTTTTACTAAAATCACCGAATTAAGAGCTAAAACACAAAGTAGCAATAACCAAGAAGCAAAAGCGGCAGAAGATGAGCTATCAAAAATTGTTTCAAGTGGTGCGATTAATGTCGCTGTTGAAAACTATCCTGAACTCAAATCAGATACTATCATGGCTAATTTACAAGAAGAGATTGTCTCAACAGAAAATAAACTCTCTTTTGCTAAACGTGGCTATAACCGTACCTTAGAGCAATATCGTGCGTTTATCGCCTCTATCCCTGCGGTATTTATTGTGAAGATTTTTCCAAGTCTCGTGATTAATAAAGAATACTGGCGTCTTGATGAAACAGCGATTAAATCAGAAGAAGCGCGCCGTATTAACTTTGATTAACACCACGCACCATAGCTTATACATAAAATAATACGGTAGATATTATTGGA