Homologs in group_311

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09260 FBDBKF_09260 94.4 Morganella morganii S1 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
EHELCC_10150 EHELCC_10150 94.4 Morganella morganii S2 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
NLDBIP_10495 NLDBIP_10495 94.4 Morganella morganii S4 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
LHKJJB_10860 LHKJJB_10860 94.4 Morganella morganii S3 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
HKOGLL_13920 HKOGLL_13920 94.4 Morganella morganii S5 lemA Magnetosome formation protein MamQ, lipoprotein antigen LemA family
PMI_RS00810 PMI_RS00810 27.7 Proteus mirabilis HI4320 - LemA family protein
PMI_RS13030 PMI_RS13030 60.9 Proteus mirabilis HI4320 - LemA family protein

Distribution of the homologs in the orthogroup group_311

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_311

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A8AVK0 2.98e-18 81 32 3 174 2 lemA Protein LemA Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
Q58971 3.35e-17 79 29 4 189 3 lemA Protein LemA Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q2W8L6 1.49e-10 62 26 3 187 3 mamQ2 Magnetosome protein MamQ 2 Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1)
Q2W8P9 1.49e-10 62 26 3 187 3 mamQ1 Magnetosome protein MamQ 1 Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1)
Q93DY8 7.15e-10 60 26 3 187 1 mamQ Magnetosome protein MamQ Magnetospirillum gryphiswaldense (strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10705
Feature type CDS
Gene -
Product LemA family protein
Location 271578 - 272171 (strand: 1)
Length 594 (nucleotides) / 197 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_311
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF04011 LemA family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1704 Cell wall/membrane/envelope biogenesis (M) M Magnetosome formation protein MamQ, lipoprotein antigen LemA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03744 LemA protein - -

Protein Sequence

MKQLIIGLLGVIVLVGVLLVSNYNSIQAQDEGVTASASEMLNQYKRRADLIPNLVKTVQASSDFERQVLQDVVEARAKVGQMNINVTDLNDPALLAKFQKAQSELGSSLSRLLAVSERYPDLKSNALYSDLMVQLEGSENRIAVARGRYIESVREYNTTIRKFPAVIIANYMGYTGKPNFSVENEAEITTVPDVQFK

Flanking regions ( +/- flanking 50bp)

CTCCCGCCGATTGCCTGAATAATAGTCGTCATTCAGACAAGGAAAATACAATGAAACAACTGATTATCGGGCTGTTAGGTGTGATTGTTTTGGTCGGCGTGCTACTGGTCTCCAATTACAACAGTATTCAGGCGCAGGATGAAGGTGTAACAGCTTCCGCCTCTGAAATGCTCAATCAATACAAACGCCGCGCGGATCTGATCCCGAACCTGGTCAAAACCGTTCAGGCCTCTTCGGACTTTGAACGTCAGGTATTGCAGGATGTTGTTGAAGCGCGGGCGAAAGTCGGGCAGATGAATATCAATGTCACTGATCTGAACGATCCGGCACTGCTGGCAAAATTTCAGAAGGCACAAAGTGAACTGGGATCTTCGCTCTCCCGGCTGCTTGCCGTGTCAGAGCGCTATCCGGATCTGAAAAGCAACGCGCTTTACAGCGACCTGATGGTGCAACTGGAAGGCAGCGAAAACCGGATCGCGGTGGCGCGCGGGCGTTACATTGAAAGTGTCCGTGAATACAACACCACTATCCGTAAATTCCCTGCGGTGATTATTGCAAACTATATGGGATACACCGGCAAACCGAACTTCAGTGTGGAAAATGAAGCAGAAATTACCACGGTACCGGATGTGCAGTTTAAGTAAATACAGACAGTAACATTGGGATTAGCTGAGCTACTCGTAGTCCTCCGGAA